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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism syw: Synechococcus sp. WH8102

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
syw00010 Glycolysis / Gluconeogenesis SBML MML
syw00020 Citrate cycle (TCA cycle) SBML MML
syw00030 Pentose phosphate pathway SBML MML
syw00040 Pentose and glucuronate interconversions SBML MML
syw00051 Fructose and mannose metabolism SBML MML
syw00052 Galactose metabolism SBML MML
syw00053 Ascorbate and aldarate metabolism SBML MML
syw00061 Fatty acid biosynthesis SBML MML
syw00071 Fatty acid metabolism SBML MML
syw00100 (Undocumented) SBML MML
syw00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
syw00220 (Undocumented) SBML MML
syw00230 Purine metabolism SBML MML
syw00240 Pyrimidine metabolism SBML MML
syw00251 (Undocumented) SBML MML
syw00252 (Undocumented) SBML MML
syw00260 Glycine, serine and threonine metabolism SBML MML
syw00271 (Undocumented) SBML MML
syw00272 (Undocumented) SBML MML
syw00280 Valine, leucine and isoleucine degradation SBML MML
syw00290 Valine, leucine and isoleucine biosynthesis SBML MML
syw00300 Lysine biosynthesis SBML MML
syw00310 Lysine degradation SBML MML
syw00330 Arginine and proline metabolism SBML MML
syw00340 Histidine metabolism SBML MML
syw00350 Tyrosine metabolism SBML MML
syw00360 Phenylalanine metabolism SBML MML
syw00361 gamma-Hexachlorocyclohexane degradation SBML MML
syw00364 Fluorobenzoate degradation SBML MML
syw00380 Tryptophan metabolism SBML MML
syw00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
syw00401 Novobiocin biosynthesis SBML MML
syw00410 beta-Alanine metabolism SBML MML
syw00430 Taurine and hypotaurine metabolism SBML MML
syw00450 Selenoamino acid metabolism SBML MML
syw00460 (Undocumented) SBML MML
syw00471 D-Glutamine and D-glutamate metabolism SBML MML
syw00473 D-Alanine metabolism SBML MML
syw00480 Glutathione metabolism SBML MML
syw00500 Starch and sucrose metabolism SBML MML
syw00520 Amino sugar and nucleotide sugar metabolism SBML MML
syw00521 Streptomycin biosynthesis SBML MML
syw00523 Polyketide sugar unit biosynthesis SBML MML
syw00530 (Undocumented) SBML MML
syw00540 Lipopolysaccharide biosynthesis SBML MML
syw00550 Peptidoglycan biosynthesis SBML MML
syw00561 Glycerolipid metabolism SBML MML
syw00562 Inositol phosphate metabolism SBML MML
syw00564 Glycerophospholipid metabolism SBML MML
syw00590 Arachidonic acid metabolism SBML MML
syw00620 Pyruvate metabolism SBML MML
syw00627 1,4-Dichlorobenzene degradation SBML MML
syw00630 Glyoxylate and dicarboxylate metabolism SBML MML
syw00632 (Undocumented) SBML MML
syw00640 Propanoate metabolism SBML MML
syw00641 3-Chloroacrylic acid degradation SBML MML
syw00643 Styrene degradation SBML MML
syw00650 Butanoate metabolism SBML MML
syw00670 One carbon pool by folate SBML MML
syw00710 (Undocumented) SBML MML
syw00720 (Undocumented) SBML MML
syw00730 Thiamine metabolism SBML MML
syw00740 Riboflavin metabolism SBML MML
syw00750 Vitamin B6 metabolism SBML MML
syw00760 Nicotinate and nicotinamide metabolism SBML MML
syw00770 Pantothenate and CoA biosynthesis SBML MML
syw00780 Biotin metabolism SBML MML
syw00785 Lipoic acid metabolism SBML MML
syw00790 Folate biosynthesis SBML MML
syw00860 Porphyrin and chlorophyll metabolism SBML MML
syw00900 Terpenoid backbone biosynthesis SBML MML
syw00906 Carotenoid biosynthesis SBML MML
syw00910 Nitrogen metabolism SBML MML
syw00920 Sulfur metabolism SBML MML
syw00941 (Undocumented) SBML MML
syw00970 Aminoacyl-tRNA biosynthesis SBML MML
syw00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
syw00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.