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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tex: Thermoanaerobacter sp. X514

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tex00010 Glycolysis / Gluconeogenesis SBML MML
tex00020 Citrate cycle (TCA cycle) SBML MML
tex00030 Pentose phosphate pathway SBML MML
tex00031 (Undocumented) SBML MML
tex00040 Pentose and glucuronate interconversions SBML MML
tex00051 Fructose and mannose metabolism SBML MML
tex00052 Galactose metabolism SBML MML
tex00053 Ascorbate and aldarate metabolism SBML MML
tex00061 Fatty acid biosynthesis SBML MML
tex00100 (Undocumented) SBML MML
tex00120 (Undocumented) SBML MML
tex00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tex00220 (Undocumented) SBML MML
tex00230 Purine metabolism SBML MML
tex00240 Pyrimidine metabolism SBML MML
tex00251 (Undocumented) SBML MML
tex00252 (Undocumented) SBML MML
tex00260 Glycine, serine and threonine metabolism SBML MML
tex00271 (Undocumented) SBML MML
tex00272 (Undocumented) SBML MML
tex00280 Valine, leucine and isoleucine degradation SBML MML
tex00290 Valine, leucine and isoleucine biosynthesis SBML MML
tex00300 Lysine biosynthesis SBML MML
tex00330 Arginine and proline metabolism SBML MML
tex00340 Histidine metabolism SBML MML
tex00350 Tyrosine metabolism SBML MML
tex00360 Phenylalanine metabolism SBML MML
tex00380 Tryptophan metabolism SBML MML
tex00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tex00401 Novobiocin biosynthesis SBML MML
tex00410 beta-Alanine metabolism SBML MML
tex00430 Taurine and hypotaurine metabolism SBML MML
tex00450 Selenoamino acid metabolism SBML MML
tex00460 (Undocumented) SBML MML
tex00471 D-Glutamine and D-glutamate metabolism SBML MML
tex00473 D-Alanine metabolism SBML MML
tex00480 Glutathione metabolism SBML MML
tex00500 Starch and sucrose metabolism SBML MML
tex00520 Amino sugar and nucleotide sugar metabolism SBML MML
tex00530 (Undocumented) SBML MML
tex00550 Peptidoglycan biosynthesis SBML MML
tex00561 Glycerolipid metabolism SBML MML
tex00564 Glycerophospholipid metabolism SBML MML
tex00600 Sphingolipid metabolism SBML MML
tex00620 Pyruvate metabolism SBML MML
tex00624 1- and 2-Methylnaphthalene degradation SBML MML
tex00630 Glyoxylate and dicarboxylate metabolism SBML MML
tex00632 (Undocumented) SBML MML
tex00640 Propanoate metabolism SBML MML
tex00641 3-Chloroacrylic acid degradation SBML MML
tex00650 Butanoate metabolism SBML MML
tex00660 C5-Branched dibasic acid metabolism SBML MML
tex00670 One carbon pool by folate SBML MML
tex00710 (Undocumented) SBML MML
tex00720 (Undocumented) SBML MML
tex00730 Thiamine metabolism SBML MML
tex00740 Riboflavin metabolism SBML MML
tex00750 Vitamin B6 metabolism SBML MML
tex00760 Nicotinate and nicotinamide metabolism SBML MML
tex00770 Pantothenate and CoA biosynthesis SBML MML
tex00780 Biotin metabolism SBML MML
tex00790 Folate biosynthesis SBML MML
tex00860 Porphyrin and chlorophyll metabolism SBML MML
tex00900 Terpenoid backbone biosynthesis SBML MML
tex00910 Nitrogen metabolism SBML MML
tex00920 Sulfur metabolism SBML MML
tex00960 (Undocumented) SBML MML
tex00970 Aminoacyl-tRNA biosynthesis SBML MML
tex00982 (Undocumented) SBML MML
tex00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.