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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tfu: Thermobifida fusca

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tfu00010 Glycolysis / Gluconeogenesis SBML MML
tfu00020 Citrate cycle (TCA cycle) SBML MML
tfu00030 Pentose phosphate pathway SBML MML
tfu00031 (Undocumented) SBML MML
tfu00040 Pentose and glucuronate interconversions SBML MML
tfu00051 Fructose and mannose metabolism SBML MML
tfu00052 Galactose metabolism SBML MML
tfu00053 Ascorbate and aldarate metabolism SBML MML
tfu00061 Fatty acid biosynthesis SBML MML
tfu00062 Fatty acid elongation in mitochondria SBML MML
tfu00071 Fatty acid metabolism SBML MML
tfu00072 Synthesis and degradation of ketone bodies SBML MML
tfu00100 (Undocumented) SBML MML
tfu00120 (Undocumented) SBML MML
tfu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tfu00150 Androgen and estrogen metabolism SBML MML
tfu00220 (Undocumented) SBML MML
tfu00230 Purine metabolism SBML MML
tfu00232 Caffeine metabolism SBML MML
tfu00240 Pyrimidine metabolism SBML MML
tfu00251 (Undocumented) SBML MML
tfu00252 (Undocumented) SBML MML
tfu00260 Glycine, serine and threonine metabolism SBML MML
tfu00271 (Undocumented) SBML MML
tfu00272 (Undocumented) SBML MML
tfu00280 Valine, leucine and isoleucine degradation SBML MML
tfu00281 Geraniol degradation SBML MML
tfu00290 Valine, leucine and isoleucine biosynthesis SBML MML
tfu00300 Lysine biosynthesis SBML MML
tfu00310 Lysine degradation SBML MML
tfu00330 Arginine and proline metabolism SBML MML
tfu00340 Histidine metabolism SBML MML
tfu00350 Tyrosine metabolism SBML MML
tfu00360 Phenylalanine metabolism SBML MML
tfu00361 gamma-Hexachlorocyclohexane degradation SBML MML
tfu00362 (Undocumented) SBML MML
tfu00363 Bisphenol A degradation SBML MML
tfu00380 Tryptophan metabolism SBML MML
tfu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tfu00401 Novobiocin biosynthesis SBML MML
tfu00410 beta-Alanine metabolism SBML MML
tfu00430 Taurine and hypotaurine metabolism SBML MML
tfu00450 Selenoamino acid metabolism SBML MML
tfu00460 (Undocumented) SBML MML
tfu00471 D-Glutamine and D-glutamate metabolism SBML MML
tfu00473 D-Alanine metabolism SBML MML
tfu00480 Glutathione metabolism SBML MML
tfu00500 Starch and sucrose metabolism SBML MML
tfu00510 (Undocumented) SBML MML
tfu00520 Amino sugar and nucleotide sugar metabolism SBML MML
tfu00521 Streptomycin biosynthesis SBML MML
tfu00530 (Undocumented) SBML MML
tfu00550 Peptidoglycan biosynthesis SBML MML
tfu00561 Glycerolipid metabolism SBML MML
tfu00562 Inositol phosphate metabolism SBML MML
tfu00564 Glycerophospholipid metabolism SBML MML
tfu00590 Arachidonic acid metabolism SBML MML
tfu00592 alpha-Linolenic acid metabolism SBML MML
tfu00620 Pyruvate metabolism SBML MML
tfu00622 Toluene and xylene degradation SBML MML
tfu00624 1- and 2-Methylnaphthalene degradation SBML MML
tfu00626 Naphthalene and anthracene degradation SBML MML
tfu00627 1,4-Dichlorobenzene degradation SBML MML
tfu00630 Glyoxylate and dicarboxylate metabolism SBML MML
tfu00632 (Undocumented) SBML MML
tfu00640 Propanoate metabolism SBML MML
tfu00641 3-Chloroacrylic acid degradation SBML MML
tfu00643 Styrene degradation SBML MML
tfu00650 Butanoate metabolism SBML MML
tfu00660 C5-Branched dibasic acid metabolism SBML MML
tfu00670 One carbon pool by folate SBML MML
tfu00680 Methane metabolism SBML MML
tfu00710 (Undocumented) SBML MML
tfu00720 (Undocumented) SBML MML
tfu00730 Thiamine metabolism SBML MML
tfu00740 Riboflavin metabolism SBML MML
tfu00750 Vitamin B6 metabolism SBML MML
tfu00760 Nicotinate and nicotinamide metabolism SBML MML
tfu00770 Pantothenate and CoA biosynthesis SBML MML
tfu00780 Biotin metabolism SBML MML
tfu00785 Lipoic acid metabolism SBML MML
tfu00790 Folate biosynthesis SBML MML
tfu00860 Porphyrin and chlorophyll metabolism SBML MML
tfu00900 Terpenoid backbone biosynthesis SBML MML
tfu00903 (Undocumented) SBML MML
tfu00906 Carotenoid biosynthesis SBML MML
tfu00910 Nitrogen metabolism SBML MML
tfu00920 Sulfur metabolism SBML MML
tfu00930 Caprolactam degradation SBML MML
tfu00940 (Undocumented) SBML MML
tfu00970 Aminoacyl-tRNA biosynthesis SBML MML
tfu00982 (Undocumented) SBML MML
tfu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.