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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tne: Thermoproteus neutrophilus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tne00010 Glycolysis / Gluconeogenesis SBML MML
tne00020 Citrate cycle (TCA cycle) SBML MML
tne00030 Pentose phosphate pathway SBML MML
tne00031 (Undocumented) SBML MML
tne00051 Fructose and mannose metabolism SBML MML
tne00052 Galactose metabolism SBML MML
tne00061 Fatty acid biosynthesis SBML MML
tne00062 Fatty acid elongation in mitochondria SBML MML
tne00071 Fatty acid metabolism SBML MML
tne00100 (Undocumented) SBML MML
tne00120 (Undocumented) SBML MML
tne00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tne00220 (Undocumented) SBML MML
tne00230 Purine metabolism SBML MML
tne00240 Pyrimidine metabolism SBML MML
tne00251 (Undocumented) SBML MML
tne00252 (Undocumented) SBML MML
tne00260 Glycine, serine and threonine metabolism SBML MML
tne00271 (Undocumented) SBML MML
tne00272 (Undocumented) SBML MML
tne00280 Valine, leucine and isoleucine degradation SBML MML
tne00281 Geraniol degradation SBML MML
tne00290 Valine, leucine and isoleucine biosynthesis SBML MML
tne00300 Lysine biosynthesis SBML MML
tne00310 Lysine degradation SBML MML
tne00330 Arginine and proline metabolism SBML MML
tne00340 Histidine metabolism SBML MML
tne00350 Tyrosine metabolism SBML MML
tne00360 Phenylalanine metabolism SBML MML
tne00380 Tryptophan metabolism SBML MML
tne00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tne00401 Novobiocin biosynthesis SBML MML
tne00410 beta-Alanine metabolism SBML MML
tne00450 Selenoamino acid metabolism SBML MML
tne00460 (Undocumented) SBML MML
tne00480 Glutathione metabolism SBML MML
tne00500 Starch and sucrose metabolism SBML MML
tne00510 (Undocumented) SBML MML
tne00520 Amino sugar and nucleotide sugar metabolism SBML MML
tne00521 Streptomycin biosynthesis SBML MML
tne00523 Polyketide sugar unit biosynthesis SBML MML
tne00550 Peptidoglycan biosynthesis SBML MML
tne00562 Inositol phosphate metabolism SBML MML
tne00564 Glycerophospholipid metabolism SBML MML
tne00592 alpha-Linolenic acid metabolism SBML MML
tne00620 Pyruvate metabolism SBML MML
tne00624 1- and 2-Methylnaphthalene degradation SBML MML
tne00630 Glyoxylate and dicarboxylate metabolism SBML MML
tne00632 (Undocumented) SBML MML
tne00633 Trinitrotoluene degradation SBML MML
tne00640 Propanoate metabolism SBML MML
tne00641 3-Chloroacrylic acid degradation SBML MML
tne00650 Butanoate metabolism SBML MML
tne00660 C5-Branched dibasic acid metabolism SBML MML
tne00670 One carbon pool by folate SBML MML
tne00680 Methane metabolism SBML MML
tne00710 (Undocumented) SBML MML
tne00720 (Undocumented) SBML MML
tne00730 Thiamine metabolism SBML MML
tne00740 Riboflavin metabolism SBML MML
tne00750 Vitamin B6 metabolism SBML MML
tne00760 Nicotinate and nicotinamide metabolism SBML MML
tne00770 Pantothenate and CoA biosynthesis SBML MML
tne00790 Folate biosynthesis SBML MML
tne00860 Porphyrin and chlorophyll metabolism SBML MML
tne00900 Terpenoid backbone biosynthesis SBML MML
tne00910 Nitrogen metabolism SBML MML
tne00920 Sulfur metabolism SBML MML
tne00930 Caprolactam degradation SBML MML
tne00940 (Undocumented) SBML MML
tne00970 Aminoacyl-tRNA biosynthesis SBML MML
tne00982 (Undocumented) SBML MML
tne00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.