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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tpd: Thermoanaerobacter pseudethanolicus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tpd00010 Glycolysis / Gluconeogenesis SBML MML
tpd00020 Citrate cycle (TCA cycle) SBML MML
tpd00030 Pentose phosphate pathway SBML MML
tpd00040 Pentose and glucuronate interconversions SBML MML
tpd00051 Fructose and mannose metabolism SBML MML
tpd00052 Galactose metabolism SBML MML
tpd00061 Fatty acid biosynthesis SBML MML
tpd00100 (Undocumented) SBML MML
tpd00120 (Undocumented) SBML MML
tpd00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tpd00220 (Undocumented) SBML MML
tpd00230 Purine metabolism SBML MML
tpd00240 Pyrimidine metabolism SBML MML
tpd00251 (Undocumented) SBML MML
tpd00252 (Undocumented) SBML MML
tpd00260 Glycine, serine and threonine metabolism SBML MML
tpd00271 (Undocumented) SBML MML
tpd00272 (Undocumented) SBML MML
tpd00280 Valine, leucine and isoleucine degradation SBML MML
tpd00290 Valine, leucine and isoleucine biosynthesis SBML MML
tpd00300 Lysine biosynthesis SBML MML
tpd00330 Arginine and proline metabolism SBML MML
tpd00340 Histidine metabolism SBML MML
tpd00350 Tyrosine metabolism SBML MML
tpd00360 Phenylalanine metabolism SBML MML
tpd00361 gamma-Hexachlorocyclohexane degradation SBML MML
tpd00363 Bisphenol A degradation SBML MML
tpd00380 Tryptophan metabolism SBML MML
tpd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tpd00401 Novobiocin biosynthesis SBML MML
tpd00410 beta-Alanine metabolism SBML MML
tpd00430 Taurine and hypotaurine metabolism SBML MML
tpd00450 Selenoamino acid metabolism SBML MML
tpd00460 (Undocumented) SBML MML
tpd00471 D-Glutamine and D-glutamate metabolism SBML MML
tpd00473 D-Alanine metabolism SBML MML
tpd00480 Glutathione metabolism SBML MML
tpd00500 Starch and sucrose metabolism SBML MML
tpd00520 Amino sugar and nucleotide sugar metabolism SBML MML
tpd00521 Streptomycin biosynthesis SBML MML
tpd00523 Polyketide sugar unit biosynthesis SBML MML
tpd00530 (Undocumented) SBML MML
tpd00550 Peptidoglycan biosynthesis SBML MML
tpd00561 Glycerolipid metabolism SBML MML
tpd00564 Glycerophospholipid metabolism SBML MML
tpd00600 Sphingolipid metabolism SBML MML
tpd00620 Pyruvate metabolism SBML MML
tpd00624 1- and 2-Methylnaphthalene degradation SBML MML
tpd00626 Naphthalene and anthracene degradation SBML MML
tpd00630 Glyoxylate and dicarboxylate metabolism SBML MML
tpd00632 (Undocumented) SBML MML
tpd00640 Propanoate metabolism SBML MML
tpd00641 3-Chloroacrylic acid degradation SBML MML
tpd00650 Butanoate metabolism SBML MML
tpd00660 C5-Branched dibasic acid metabolism SBML MML
tpd00670 One carbon pool by folate SBML MML
tpd00710 (Undocumented) SBML MML
tpd00720 (Undocumented) SBML MML
tpd00730 Thiamine metabolism SBML MML
tpd00740 Riboflavin metabolism SBML MML
tpd00750 Vitamin B6 metabolism SBML MML
tpd00760 Nicotinate and nicotinamide metabolism SBML MML
tpd00770 Pantothenate and CoA biosynthesis SBML MML
tpd00780 Biotin metabolism SBML MML
tpd00785 Lipoic acid metabolism SBML MML
tpd00790 Folate biosynthesis SBML MML
tpd00860 Porphyrin and chlorophyll metabolism SBML MML
tpd00900 Terpenoid backbone biosynthesis SBML MML
tpd00903 (Undocumented) SBML MML
tpd00910 Nitrogen metabolism SBML MML
tpd00920 Sulfur metabolism SBML MML
tpd00960 (Undocumented) SBML MML
tpd00970 Aminoacyl-tRNA biosynthesis SBML MML
tpd00982 (Undocumented) SBML MML
tpd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.