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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tva: Trichomonas vaginalis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tva00010 Glycolysis / Gluconeogenesis SBML MML
tva00020 Citrate cycle (TCA cycle) SBML MML
tva00030 Pentose phosphate pathway SBML MML
tva00040 Pentose and glucuronate interconversions SBML MML
tva00051 Fructose and mannose metabolism SBML MML
tva00052 Galactose metabolism SBML MML
tva00053 Ascorbate and aldarate metabolism SBML MML
tva00061 Fatty acid biosynthesis SBML MML
tva00071 Fatty acid metabolism SBML MML
tva00072 Synthesis and degradation of ketone bodies SBML MML
tva00100 (Undocumented) SBML MML
tva00120 (Undocumented) SBML MML
tva00150 Androgen and estrogen metabolism SBML MML
tva00220 (Undocumented) SBML MML
tva00230 Purine metabolism SBML MML
tva00232 Caffeine metabolism SBML MML
tva00240 Pyrimidine metabolism SBML MML
tva00251 (Undocumented) SBML MML
tva00252 (Undocumented) SBML MML
tva00260 Glycine, serine and threonine metabolism SBML MML
tva00271 (Undocumented) SBML MML
tva00272 (Undocumented) SBML MML
tva00280 Valine, leucine and isoleucine degradation SBML MML
tva00290 Valine, leucine and isoleucine biosynthesis SBML MML
tva00300 Lysine biosynthesis SBML MML
tva00310 Lysine degradation SBML MML
tva00330 Arginine and proline metabolism SBML MML
tva00340 Histidine metabolism SBML MML
tva00350 Tyrosine metabolism SBML MML
tva00360 Phenylalanine metabolism SBML MML
tva00361 gamma-Hexachlorocyclohexane degradation SBML MML
tva00363 Bisphenol A degradation SBML MML
tva00380 Tryptophan metabolism SBML MML
tva00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tva00410 beta-Alanine metabolism SBML MML
tva00440 Phosphonate and phosphinate metabolism SBML MML
tva00450 Selenoamino acid metabolism SBML MML
tva00460 (Undocumented) SBML MML
tva00471 D-Glutamine and D-glutamate metabolism SBML MML
tva00500 Starch and sucrose metabolism SBML MML
tva00510 (Undocumented) SBML MML
tva00520 Amino sugar and nucleotide sugar metabolism SBML MML
tva00521 Streptomycin biosynthesis SBML MML
tva00530 (Undocumented) SBML MML
tva00550 Peptidoglycan biosynthesis SBML MML
tva00561 Glycerolipid metabolism SBML MML
tva00562 Inositol phosphate metabolism SBML MML
tva00564 Glycerophospholipid metabolism SBML MML
tva00600 Sphingolipid metabolism SBML MML
tva00620 Pyruvate metabolism SBML MML
tva00624 1- and 2-Methylnaphthalene degradation SBML MML
tva00626 Naphthalene and anthracene degradation SBML MML
tva00632 (Undocumented) SBML MML
tva00640 Propanoate metabolism SBML MML
tva00641 3-Chloroacrylic acid degradation SBML MML
tva00650 Butanoate metabolism SBML MML
tva00660 C5-Branched dibasic acid metabolism SBML MML
tva00670 One carbon pool by folate SBML MML
tva00710 (Undocumented) SBML MML
tva00720 (Undocumented) SBML MML
tva00730 Thiamine metabolism SBML MML
tva00740 Riboflavin metabolism SBML MML
tva00750 Vitamin B6 metabolism SBML MML
tva00760 Nicotinate and nicotinamide metabolism SBML MML
tva00770 Pantothenate and CoA biosynthesis SBML MML
tva00780 Biotin metabolism SBML MML
tva00785 Lipoic acid metabolism SBML MML
tva00790 Folate biosynthesis SBML MML
tva00900 Terpenoid backbone biosynthesis SBML MML
tva00903 (Undocumented) SBML MML
tva00910 Nitrogen metabolism SBML MML
tva00920 Sulfur metabolism SBML MML
tva00930 Caprolactam degradation SBML MML
tva00940 (Undocumented) SBML MML
tva00950 (Undocumented) SBML MML
tva00960 (Undocumented) SBML MML
tva00970 Aminoacyl-tRNA biosynthesis SBML MML
tva00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.