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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism uma: Ustilago maydis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
uma00010 Glycolysis / Gluconeogenesis SBML MML
uma00020 Citrate cycle (TCA cycle) SBML MML
uma00030 Pentose phosphate pathway SBML MML
uma00031 (Undocumented) SBML MML
uma00040 Pentose and glucuronate interconversions SBML MML
uma00051 Fructose and mannose metabolism SBML MML
uma00052 Galactose metabolism SBML MML
uma00053 Ascorbate and aldarate metabolism SBML MML
uma00061 Fatty acid biosynthesis SBML MML
uma00062 Fatty acid elongation in mitochondria SBML MML
uma00071 Fatty acid metabolism SBML MML
uma00072 Synthesis and degradation of ketone bodies SBML MML
uma00100 (Undocumented) SBML MML
uma00120 (Undocumented) SBML MML
uma00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
uma00150 Androgen and estrogen metabolism SBML MML
uma00220 (Undocumented) SBML MML
uma00230 Purine metabolism SBML MML
uma00240 Pyrimidine metabolism SBML MML
uma00251 (Undocumented) SBML MML
uma00252 (Undocumented) SBML MML
uma00260 Glycine, serine and threonine metabolism SBML MML
uma00271 (Undocumented) SBML MML
uma00272 (Undocumented) SBML MML
uma00280 Valine, leucine and isoleucine degradation SBML MML
uma00281 Geraniol degradation SBML MML
uma00290 Valine, leucine and isoleucine biosynthesis SBML MML
uma00300 Lysine biosynthesis SBML MML
uma00310 Lysine degradation SBML MML
uma00330 Arginine and proline metabolism SBML MML
uma00340 Histidine metabolism SBML MML
uma00350 Tyrosine metabolism SBML MML
uma00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
uma00360 Phenylalanine metabolism SBML MML
uma00361 gamma-Hexachlorocyclohexane degradation SBML MML
uma00362 (Undocumented) SBML MML
uma00363 Bisphenol A degradation SBML MML
uma00364 Fluorobenzoate degradation SBML MML
uma00380 Tryptophan metabolism SBML MML
uma00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
uma00401 Novobiocin biosynthesis SBML MML
uma00410 beta-Alanine metabolism SBML MML
uma00430 Taurine and hypotaurine metabolism SBML MML
uma00450 Selenoamino acid metabolism SBML MML
uma00460 (Undocumented) SBML MML
uma00472 D-Arginine and D-ornithine metabolism SBML MML
uma00480 Glutathione metabolism SBML MML
uma00500 Starch and sucrose metabolism SBML MML
uma00510 (Undocumented) SBML MML
uma00520 Amino sugar and nucleotide sugar metabolism SBML MML
uma00521 Streptomycin biosynthesis SBML MML
uma00530 (Undocumented) SBML MML
uma00550 Peptidoglycan biosynthesis SBML MML
uma00561 Glycerolipid metabolism SBML MML
uma00562 Inositol phosphate metabolism SBML MML
uma00564 Glycerophospholipid metabolism SBML MML
uma00565 Ether lipid metabolism SBML MML
uma00590 Arachidonic acid metabolism SBML MML
uma00591 Linoleic acid metabolism SBML MML
uma00592 alpha-Linolenic acid metabolism SBML MML
uma00600 Sphingolipid metabolism SBML MML
uma00620 Pyruvate metabolism SBML MML
uma00622 Toluene and xylene degradation SBML MML
uma00624 1- and 2-Methylnaphthalene degradation SBML MML
uma00625 (Undocumented) SBML MML
uma00626 Naphthalene and anthracene degradation SBML MML
uma00627 1,4-Dichlorobenzene degradation SBML MML
uma00628 Fluorene degradation SBML MML
uma00630 Glyoxylate and dicarboxylate metabolism SBML MML
uma00631 1,2-Dichloroethane degradation SBML MML
uma00632 (Undocumented) SBML MML
uma00640 Propanoate metabolism SBML MML
uma00641 3-Chloroacrylic acid degradation SBML MML
uma00643 Styrene degradation SBML MML
uma00650 Butanoate metabolism SBML MML
uma00670 One carbon pool by folate SBML MML
uma00680 Methane metabolism SBML MML
uma00710 (Undocumented) SBML MML
uma00720 (Undocumented) SBML MML
uma00730 Thiamine metabolism SBML MML
uma00740 Riboflavin metabolism SBML MML
uma00750 Vitamin B6 metabolism SBML MML
uma00760 Nicotinate and nicotinamide metabolism SBML MML
uma00770 Pantothenate and CoA biosynthesis SBML MML
uma00780 Biotin metabolism SBML MML
uma00785 Lipoic acid metabolism SBML MML
uma00790 Folate biosynthesis SBML MML
uma00860 Porphyrin and chlorophyll metabolism SBML MML
uma00900 Terpenoid backbone biosynthesis SBML MML
uma00903 (Undocumented) SBML MML
uma00910 Nitrogen metabolism SBML MML
uma00920 Sulfur metabolism SBML MML
uma00930 Caprolactam degradation SBML MML
uma00941 (Undocumented) SBML MML
uma00950 (Undocumented) SBML MML
uma00960 (Undocumented) SBML MML
uma00970 Aminoacyl-tRNA biosynthesis SBML MML
uma00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
uma00982 (Undocumented) SBML MML
uma00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.