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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism vco: Vibrio cholerae O395

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
vco00010 Glycolysis / Gluconeogenesis SBML MML
vco00020 Citrate cycle (TCA cycle) SBML MML
vco00030 Pentose phosphate pathway SBML MML
vco00040 Pentose and glucuronate interconversions SBML MML
vco00051 Fructose and mannose metabolism SBML MML
vco00052 Galactose metabolism SBML MML
vco00053 Ascorbate and aldarate metabolism SBML MML
vco00061 Fatty acid biosynthesis SBML MML
vco00062 Fatty acid elongation in mitochondria SBML MML
vco00071 Fatty acid metabolism SBML MML
vco00100 (Undocumented) SBML MML
vco00120 (Undocumented) SBML MML
vco00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
vco00220 (Undocumented) SBML MML
vco00230 Purine metabolism SBML MML
vco00240 Pyrimidine metabolism SBML MML
vco00251 (Undocumented) SBML MML
vco00252 (Undocumented) SBML MML
vco00260 Glycine, serine and threonine metabolism SBML MML
vco00271 (Undocumented) SBML MML
vco00272 (Undocumented) SBML MML
vco00280 Valine, leucine and isoleucine degradation SBML MML
vco00281 Geraniol degradation SBML MML
vco00290 Valine, leucine and isoleucine biosynthesis SBML MML
vco00300 Lysine biosynthesis SBML MML
vco00310 Lysine degradation SBML MML
vco00330 Arginine and proline metabolism SBML MML
vco00340 Histidine metabolism SBML MML
vco00350 Tyrosine metabolism SBML MML
vco00360 Phenylalanine metabolism SBML MML
vco00362 (Undocumented) SBML MML
vco00380 Tryptophan metabolism SBML MML
vco00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
vco00401 Novobiocin biosynthesis SBML MML
vco00410 beta-Alanine metabolism SBML MML
vco00430 Taurine and hypotaurine metabolism SBML MML
vco00440 Phosphonate and phosphinate metabolism SBML MML
vco00450 Selenoamino acid metabolism SBML MML
vco00460 (Undocumented) SBML MML
vco00471 D-Glutamine and D-glutamate metabolism SBML MML
vco00473 D-Alanine metabolism SBML MML
vco00480 Glutathione metabolism SBML MML
vco00500 Starch and sucrose metabolism SBML MML
vco00520 Amino sugar and nucleotide sugar metabolism SBML MML
vco00521 Streptomycin biosynthesis SBML MML
vco00530 (Undocumented) SBML MML
vco00540 Lipopolysaccharide biosynthesis SBML MML
vco00550 Peptidoglycan biosynthesis SBML MML
vco00561 Glycerolipid metabolism SBML MML
vco00562 Inositol phosphate metabolism SBML MML
vco00564 Glycerophospholipid metabolism SBML MML
vco00592 alpha-Linolenic acid metabolism SBML MML
vco00600 Sphingolipid metabolism SBML MML
vco00620 Pyruvate metabolism SBML MML
vco00624 1- and 2-Methylnaphthalene degradation SBML MML
vco00630 Glyoxylate and dicarboxylate metabolism SBML MML
vco00632 (Undocumented) SBML MML
vco00633 Trinitrotoluene degradation SBML MML
vco00640 Propanoate metabolism SBML MML
vco00641 3-Chloroacrylic acid degradation SBML MML
vco00650 Butanoate metabolism SBML MML
vco00660 C5-Branched dibasic acid metabolism SBML MML
vco00670 One carbon pool by folate SBML MML
vco00680 Methane metabolism SBML MML
vco00710 (Undocumented) SBML MML
vco00720 (Undocumented) SBML MML
vco00730 Thiamine metabolism SBML MML
vco00740 Riboflavin metabolism SBML MML
vco00750 Vitamin B6 metabolism SBML MML
vco00760 Nicotinate and nicotinamide metabolism SBML MML
vco00770 Pantothenate and CoA biosynthesis SBML MML
vco00780 Biotin metabolism SBML MML
vco00785 Lipoic acid metabolism SBML MML
vco00790 Folate biosynthesis SBML MML
vco00860 Porphyrin and chlorophyll metabolism SBML MML
vco00900 Terpenoid backbone biosynthesis SBML MML
vco00903 (Undocumented) SBML MML
vco00910 Nitrogen metabolism SBML MML
vco00920 Sulfur metabolism SBML MML
vco00930 Caprolactam degradation SBML MML
vco00940 (Undocumented) SBML MML
vco00950 (Undocumented) SBML MML
vco00970 Aminoacyl-tRNA biosynthesis SBML MML
vco00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
vco00982 (Undocumented) SBML MML
vco00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.