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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism vha: Vibrio harveyi

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
vha00010 Glycolysis / Gluconeogenesis SBML MML
vha00020 Citrate cycle (TCA cycle) SBML MML
vha00030 Pentose phosphate pathway SBML MML
vha00031 (Undocumented) SBML MML
vha00040 Pentose and glucuronate interconversions SBML MML
vha00051 Fructose and mannose metabolism SBML MML
vha00052 Galactose metabolism SBML MML
vha00053 Ascorbate and aldarate metabolism SBML MML
vha00061 Fatty acid biosynthesis SBML MML
vha00062 Fatty acid elongation in mitochondria SBML MML
vha00071 Fatty acid metabolism SBML MML
vha00072 Synthesis and degradation of ketone bodies SBML MML
vha00100 (Undocumented) SBML MML
vha00120 (Undocumented) SBML MML
vha00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
vha00220 (Undocumented) SBML MML
vha00230 Purine metabolism SBML MML
vha00240 Pyrimidine metabolism SBML MML
vha00251 (Undocumented) SBML MML
vha00252 (Undocumented) SBML MML
vha00260 Glycine, serine and threonine metabolism SBML MML
vha00271 (Undocumented) SBML MML
vha00272 (Undocumented) SBML MML
vha00280 Valine, leucine and isoleucine degradation SBML MML
vha00281 Geraniol degradation SBML MML
vha00290 Valine, leucine and isoleucine biosynthesis SBML MML
vha00300 Lysine biosynthesis SBML MML
vha00310 Lysine degradation SBML MML
vha00311 Penicillin and cephalosporin biosynthesis SBML MML
vha00330 Arginine and proline metabolism SBML MML
vha00340 Histidine metabolism SBML MML
vha00350 Tyrosine metabolism SBML MML
vha00360 Phenylalanine metabolism SBML MML
vha00361 gamma-Hexachlorocyclohexane degradation SBML MML
vha00362 (Undocumented) SBML MML
vha00364 Fluorobenzoate degradation SBML MML
vha00380 Tryptophan metabolism SBML MML
vha00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
vha00401 Novobiocin biosynthesis SBML MML
vha00410 beta-Alanine metabolism SBML MML
vha00430 Taurine and hypotaurine metabolism SBML MML
vha00440 Phosphonate and phosphinate metabolism SBML MML
vha00450 Selenoamino acid metabolism SBML MML
vha00460 (Undocumented) SBML MML
vha00471 D-Glutamine and D-glutamate metabolism SBML MML
vha00473 D-Alanine metabolism SBML MML
vha00480 Glutathione metabolism SBML MML
vha00500 Starch and sucrose metabolism SBML MML
vha00510 (Undocumented) SBML MML
vha00520 Amino sugar and nucleotide sugar metabolism SBML MML
vha00521 Streptomycin biosynthesis SBML MML
vha00530 (Undocumented) SBML MML
vha00540 Lipopolysaccharide biosynthesis SBML MML
vha00550 Peptidoglycan biosynthesis SBML MML
vha00561 Glycerolipid metabolism SBML MML
vha00562 Inositol phosphate metabolism SBML MML
vha00564 Glycerophospholipid metabolism SBML MML
vha00590 Arachidonic acid metabolism SBML MML
vha00592 alpha-Linolenic acid metabolism SBML MML
vha00600 Sphingolipid metabolism SBML MML
vha00620 Pyruvate metabolism SBML MML
vha00623 2,4-Dichlorobenzoate degradation SBML MML
vha00624 1- and 2-Methylnaphthalene degradation SBML MML
vha00626 Naphthalene and anthracene degradation SBML MML
vha00627 1,4-Dichlorobenzene degradation SBML MML
vha00630 Glyoxylate and dicarboxylate metabolism SBML MML
vha00631 1,2-Dichloroethane degradation SBML MML
vha00632 (Undocumented) SBML MML
vha00633 Trinitrotoluene degradation SBML MML
vha00640 Propanoate metabolism SBML MML
vha00641 3-Chloroacrylic acid degradation SBML MML
vha00642 Ethylbenzene degradation SBML MML
vha00643 Styrene degradation SBML MML
vha00650 Butanoate metabolism SBML MML
vha00660 C5-Branched dibasic acid metabolism SBML MML
vha00670 One carbon pool by folate SBML MML
vha00680 Methane metabolism SBML MML
vha00710 (Undocumented) SBML MML
vha00720 (Undocumented) SBML MML
vha00730 Thiamine metabolism SBML MML
vha00740 Riboflavin metabolism SBML MML
vha00750 Vitamin B6 metabolism SBML MML
vha00760 Nicotinate and nicotinamide metabolism SBML MML
vha00770 Pantothenate and CoA biosynthesis SBML MML
vha00780 Biotin metabolism SBML MML
vha00790 Folate biosynthesis SBML MML
vha00791 Atrazine degradation SBML MML
vha00860 Porphyrin and chlorophyll metabolism SBML MML
vha00900 Terpenoid backbone biosynthesis SBML MML
vha00903 (Undocumented) SBML MML
vha00906 Carotenoid biosynthesis SBML MML
vha00910 Nitrogen metabolism SBML MML
vha00920 Sulfur metabolism SBML MML
vha00930 Caprolactam degradation SBML MML
vha00940 (Undocumented) SBML MML
vha00950 (Undocumented) SBML MML
vha00960 (Undocumented) SBML MML
vha00970 Aminoacyl-tRNA biosynthesis SBML MML
vha00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
vha00982 (Undocumented) SBML MML
vha00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.