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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism wsu: Wolinella succinogenes

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
wsu00010 Glycolysis / Gluconeogenesis SBML MML
wsu00020 Citrate cycle (TCA cycle) SBML MML
wsu00030 Pentose phosphate pathway SBML MML
wsu00031 (Undocumented) SBML MML
wsu00040 Pentose and glucuronate interconversions SBML MML
wsu00051 Fructose and mannose metabolism SBML MML
wsu00052 Galactose metabolism SBML MML
wsu00061 Fatty acid biosynthesis SBML MML
wsu00100 (Undocumented) SBML MML
wsu00120 (Undocumented) SBML MML
wsu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
wsu00220 (Undocumented) SBML MML
wsu00230 Purine metabolism SBML MML
wsu00240 Pyrimidine metabolism SBML MML
wsu00251 (Undocumented) SBML MML
wsu00252 (Undocumented) SBML MML
wsu00260 Glycine, serine and threonine metabolism SBML MML
wsu00271 (Undocumented) SBML MML
wsu00272 (Undocumented) SBML MML
wsu00280 Valine, leucine and isoleucine degradation SBML MML
wsu00290 Valine, leucine and isoleucine biosynthesis SBML MML
wsu00300 Lysine biosynthesis SBML MML
wsu00330 Arginine and proline metabolism SBML MML
wsu00340 Histidine metabolism SBML MML
wsu00350 Tyrosine metabolism SBML MML
wsu00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
wsu00360 Phenylalanine metabolism SBML MML
wsu00362 (Undocumented) SBML MML
wsu00380 Tryptophan metabolism SBML MML
wsu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
wsu00401 Novobiocin biosynthesis SBML MML
wsu00410 beta-Alanine metabolism SBML MML
wsu00450 Selenoamino acid metabolism SBML MML
wsu00460 (Undocumented) SBML MML
wsu00471 D-Glutamine and D-glutamate metabolism SBML MML
wsu00473 D-Alanine metabolism SBML MML
wsu00500 Starch and sucrose metabolism SBML MML
wsu00520 Amino sugar and nucleotide sugar metabolism SBML MML
wsu00530 (Undocumented) SBML MML
wsu00540 Lipopolysaccharide biosynthesis SBML MML
wsu00550 Peptidoglycan biosynthesis SBML MML
wsu00561 Glycerolipid metabolism SBML MML
wsu00564 Glycerophospholipid metabolism SBML MML
wsu00620 Pyruvate metabolism SBML MML
wsu00624 1- and 2-Methylnaphthalene degradation SBML MML
wsu00625 (Undocumented) SBML MML
wsu00628 Fluorene degradation SBML MML
wsu00630 Glyoxylate and dicarboxylate metabolism SBML MML
wsu00632 (Undocumented) SBML MML
wsu00640 Propanoate metabolism SBML MML
wsu00650 Butanoate metabolism SBML MML
wsu00660 C5-Branched dibasic acid metabolism SBML MML
wsu00670 One carbon pool by folate SBML MML
wsu00680 Methane metabolism SBML MML
wsu00710 (Undocumented) SBML MML
wsu00720 (Undocumented) SBML MML
wsu00730 Thiamine metabolism SBML MML
wsu00740 Riboflavin metabolism SBML MML
wsu00750 Vitamin B6 metabolism SBML MML
wsu00760 Nicotinate and nicotinamide metabolism SBML MML
wsu00770 Pantothenate and CoA biosynthesis SBML MML
wsu00780 Biotin metabolism SBML MML
wsu00790 Folate biosynthesis SBML MML
wsu00860 Porphyrin and chlorophyll metabolism SBML MML
wsu00900 Terpenoid backbone biosynthesis SBML MML
wsu00910 Nitrogen metabolism SBML MML
wsu00920 Sulfur metabolism SBML MML
wsu00940 (Undocumented) SBML MML
wsu00950 (Undocumented) SBML MML
wsu00960 (Undocumented) SBML MML
wsu00970 Aminoacyl-tRNA biosynthesis SBML MML
wsu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.