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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism xau: Xanthobacter autotrophicus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
xau00010 Glycolysis / Gluconeogenesis SBML MML
xau00020 Citrate cycle (TCA cycle) SBML MML
xau00030 Pentose phosphate pathway SBML MML
xau00031 (Undocumented) SBML MML
xau00040 Pentose and glucuronate interconversions SBML MML
xau00051 Fructose and mannose metabolism SBML MML
xau00052 Galactose metabolism SBML MML
xau00053 Ascorbate and aldarate metabolism SBML MML
xau00061 Fatty acid biosynthesis SBML MML
xau00062 Fatty acid elongation in mitochondria SBML MML
xau00071 Fatty acid metabolism SBML MML
xau00072 Synthesis and degradation of ketone bodies SBML MML
xau00100 (Undocumented) SBML MML
xau00120 (Undocumented) SBML MML
xau00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
xau00150 Androgen and estrogen metabolism SBML MML
xau00220 (Undocumented) SBML MML
xau00230 Purine metabolism SBML MML
xau00240 Pyrimidine metabolism SBML MML
xau00251 (Undocumented) SBML MML
xau00252 (Undocumented) SBML MML
xau00260 Glycine, serine and threonine metabolism SBML MML
xau00271 (Undocumented) SBML MML
xau00272 (Undocumented) SBML MML
xau00280 Valine, leucine and isoleucine degradation SBML MML
xau00281 Geraniol degradation SBML MML
xau00290 Valine, leucine and isoleucine biosynthesis SBML MML
xau00300 Lysine biosynthesis SBML MML
xau00310 Lysine degradation SBML MML
xau00311 Penicillin and cephalosporin biosynthesis SBML MML
xau00330 Arginine and proline metabolism SBML MML
xau00340 Histidine metabolism SBML MML
xau00350 Tyrosine metabolism SBML MML
xau00360 Phenylalanine metabolism SBML MML
xau00361 gamma-Hexachlorocyclohexane degradation SBML MML
xau00362 (Undocumented) SBML MML
xau00363 Bisphenol A degradation SBML MML
xau00364 Fluorobenzoate degradation SBML MML
xau00380 Tryptophan metabolism SBML MML
xau00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
xau00401 Novobiocin biosynthesis SBML MML
xau00410 beta-Alanine metabolism SBML MML
xau00430 Taurine and hypotaurine metabolism SBML MML
xau00440 Phosphonate and phosphinate metabolism SBML MML
xau00450 Selenoamino acid metabolism SBML MML
xau00460 (Undocumented) SBML MML
xau00471 D-Glutamine and D-glutamate metabolism SBML MML
xau00472 D-Arginine and D-ornithine metabolism SBML MML
xau00473 D-Alanine metabolism SBML MML
xau00480 Glutathione metabolism SBML MML
xau00500 Starch and sucrose metabolism SBML MML
xau00520 Amino sugar and nucleotide sugar metabolism SBML MML
xau00521 Streptomycin biosynthesis SBML MML
xau00523 Polyketide sugar unit biosynthesis SBML MML
xau00530 (Undocumented) SBML MML
xau00540 Lipopolysaccharide biosynthesis SBML MML
xau00550 Peptidoglycan biosynthesis SBML MML
xau00561 Glycerolipid metabolism SBML MML
xau00562 Inositol phosphate metabolism SBML MML
xau00564 Glycerophospholipid metabolism SBML MML
xau00590 Arachidonic acid metabolism SBML MML
xau00592 alpha-Linolenic acid metabolism SBML MML
xau00600 Sphingolipid metabolism SBML MML
xau00620 Pyruvate metabolism SBML MML
xau00621 (Undocumented) SBML MML
xau00622 Toluene and xylene degradation SBML MML
xau00623 2,4-Dichlorobenzoate degradation SBML MML
xau00624 1- and 2-Methylnaphthalene degradation SBML MML
xau00625 (Undocumented) SBML MML
xau00626 Naphthalene and anthracene degradation SBML MML
xau00627 1,4-Dichlorobenzene degradation SBML MML
xau00628 Fluorene degradation SBML MML
xau00629 Carbazole degradation SBML MML
xau00630 Glyoxylate and dicarboxylate metabolism SBML MML
xau00631 1,2-Dichloroethane degradation SBML MML
xau00632 (Undocumented) SBML MML
xau00633 Trinitrotoluene degradation SBML MML
xau00640 Propanoate metabolism SBML MML
xau00641 3-Chloroacrylic acid degradation SBML MML
xau00642 Ethylbenzene degradation SBML MML
xau00643 Styrene degradation SBML MML
xau00650 Butanoate metabolism SBML MML
xau00660 C5-Branched dibasic acid metabolism SBML MML
xau00670 One carbon pool by folate SBML MML
xau00680 Methane metabolism SBML MML
xau00710 (Undocumented) SBML MML
xau00720 (Undocumented) SBML MML
xau00730 Thiamine metabolism SBML MML
xau00740 Riboflavin metabolism SBML MML
xau00750 Vitamin B6 metabolism SBML MML
xau00760 Nicotinate and nicotinamide metabolism SBML MML
xau00770 Pantothenate and CoA biosynthesis SBML MML
xau00780 Biotin metabolism SBML MML
xau00785 Lipoic acid metabolism SBML MML
xau00790 Folate biosynthesis SBML MML
xau00791 Atrazine degradation SBML MML
xau00860 Porphyrin and chlorophyll metabolism SBML MML
xau00900 Terpenoid backbone biosynthesis SBML MML
xau00903 (Undocumented) SBML MML
xau00906 Carotenoid biosynthesis SBML MML
xau00910 Nitrogen metabolism SBML MML
xau00920 Sulfur metabolism SBML MML
xau00930 Caprolactam degradation SBML MML
xau00940 (Undocumented) SBML MML
xau00950 (Undocumented) SBML MML
xau00960 (Undocumented) SBML MML
xau00970 Aminoacyl-tRNA biosynthesis SBML MML
xau00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
xau00982 (Undocumented) SBML MML
xau00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.