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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism xft: Xylella fastidiosa Temecula1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
xft00010 Glycolysis / Gluconeogenesis SBML MML
xft00020 Citrate cycle (TCA cycle) SBML MML
xft00030 Pentose phosphate pathway SBML MML
xft00040 Pentose and glucuronate interconversions SBML MML
xft00051 Fructose and mannose metabolism SBML MML
xft00052 Galactose metabolism SBML MML
xft00053 Ascorbate and aldarate metabolism SBML MML
xft00061 Fatty acid biosynthesis SBML MML
xft00071 Fatty acid metabolism SBML MML
xft00100 (Undocumented) SBML MML
xft00120 (Undocumented) SBML MML
xft00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
xft00140 (Undocumented) SBML MML
xft00150 Androgen and estrogen metabolism SBML MML
xft00220 (Undocumented) SBML MML
xft00230 Purine metabolism SBML MML
xft00240 Pyrimidine metabolism SBML MML
xft00251 (Undocumented) SBML MML
xft00252 (Undocumented) SBML MML
xft00260 Glycine, serine and threonine metabolism SBML MML
xft00271 (Undocumented) SBML MML
xft00272 (Undocumented) SBML MML
xft00280 Valine, leucine and isoleucine degradation SBML MML
xft00290 Valine, leucine and isoleucine biosynthesis SBML MML
xft00300 Lysine biosynthesis SBML MML
xft00310 Lysine degradation SBML MML
xft00330 Arginine and proline metabolism SBML MML
xft00340 Histidine metabolism SBML MML
xft00350 Tyrosine metabolism SBML MML
xft00360 Phenylalanine metabolism SBML MML
xft00361 gamma-Hexachlorocyclohexane degradation SBML MML
xft00380 Tryptophan metabolism SBML MML
xft00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
xft00401 Novobiocin biosynthesis SBML MML
xft00410 beta-Alanine metabolism SBML MML
xft00450 Selenoamino acid metabolism SBML MML
xft00460 (Undocumented) SBML MML
xft00471 D-Glutamine and D-glutamate metabolism SBML MML
xft00473 D-Alanine metabolism SBML MML
xft00480 Glutathione metabolism SBML MML
xft00500 Starch and sucrose metabolism SBML MML
xft00520 Amino sugar and nucleotide sugar metabolism SBML MML
xft00521 Streptomycin biosynthesis SBML MML
xft00523 Polyketide sugar unit biosynthesis SBML MML
xft00530 (Undocumented) SBML MML
xft00540 Lipopolysaccharide biosynthesis SBML MML
xft00550 Peptidoglycan biosynthesis SBML MML
xft00561 Glycerolipid metabolism SBML MML
xft00562 Inositol phosphate metabolism SBML MML
xft00564 Glycerophospholipid metabolism SBML MML
xft00590 Arachidonic acid metabolism SBML MML
xft00620 Pyruvate metabolism SBML MML
xft00624 1- and 2-Methylnaphthalene degradation SBML MML
xft00626 Naphthalene and anthracene degradation SBML MML
xft00630 Glyoxylate and dicarboxylate metabolism SBML MML
xft00632 (Undocumented) SBML MML
xft00640 Propanoate metabolism SBML MML
xft00641 3-Chloroacrylic acid degradation SBML MML
xft00650 Butanoate metabolism SBML MML
xft00660 C5-Branched dibasic acid metabolism SBML MML
xft00670 One carbon pool by folate SBML MML
xft00680 Methane metabolism SBML MML
xft00710 (Undocumented) SBML MML
xft00720 (Undocumented) SBML MML
xft00730 Thiamine metabolism SBML MML
xft00740 Riboflavin metabolism SBML MML
xft00750 Vitamin B6 metabolism SBML MML
xft00760 Nicotinate and nicotinamide metabolism SBML MML
xft00770 Pantothenate and CoA biosynthesis SBML MML
xft00780 Biotin metabolism SBML MML
xft00785 Lipoic acid metabolism SBML MML
xft00790 Folate biosynthesis SBML MML
xft00860 Porphyrin and chlorophyll metabolism SBML MML
xft00900 Terpenoid backbone biosynthesis SBML MML
xft00903 (Undocumented) SBML MML
xft00910 Nitrogen metabolism SBML MML
xft00920 Sulfur metabolism SBML MML
xft00930 Caprolactam degradation SBML MML
xft00940 (Undocumented) SBML MML
xft00960 (Undocumented) SBML MML
xft00970 Aminoacyl-tRNA biosynthesis SBML MML
xft00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
xft00982 (Undocumented) SBML MML
xft00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.