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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ypm: Yersinia pestis Mediaevails

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ypm00010 Glycolysis / Gluconeogenesis SBML MML
ypm00020 Citrate cycle (TCA cycle) SBML MML
ypm00030 Pentose phosphate pathway SBML MML
ypm00031 (Undocumented) SBML MML
ypm00040 Pentose and glucuronate interconversions SBML MML
ypm00051 Fructose and mannose metabolism SBML MML
ypm00052 Galactose metabolism SBML MML
ypm00053 Ascorbate and aldarate metabolism SBML MML
ypm00061 Fatty acid biosynthesis SBML MML
ypm00062 Fatty acid elongation in mitochondria SBML MML
ypm00071 Fatty acid metabolism SBML MML
ypm00100 (Undocumented) SBML MML
ypm00120 (Undocumented) SBML MML
ypm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ypm00220 (Undocumented) SBML MML
ypm00230 Purine metabolism SBML MML
ypm00240 Pyrimidine metabolism SBML MML
ypm00251 (Undocumented) SBML MML
ypm00252 (Undocumented) SBML MML
ypm00260 Glycine, serine and threonine metabolism SBML MML
ypm00271 (Undocumented) SBML MML
ypm00272 (Undocumented) SBML MML
ypm00280 Valine, leucine and isoleucine degradation SBML MML
ypm00281 Geraniol degradation SBML MML
ypm00290 Valine, leucine and isoleucine biosynthesis SBML MML
ypm00300 Lysine biosynthesis SBML MML
ypm00310 Lysine degradation SBML MML
ypm00330 Arginine and proline metabolism SBML MML
ypm00340 Histidine metabolism SBML MML
ypm00350 Tyrosine metabolism SBML MML
ypm00360 Phenylalanine metabolism SBML MML
ypm00361 gamma-Hexachlorocyclohexane degradation SBML MML
ypm00362 (Undocumented) SBML MML
ypm00364 Fluorobenzoate degradation SBML MML
ypm00380 Tryptophan metabolism SBML MML
ypm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ypm00401 Novobiocin biosynthesis SBML MML
ypm00410 beta-Alanine metabolism SBML MML
ypm00430 Taurine and hypotaurine metabolism SBML MML
ypm00450 Selenoamino acid metabolism SBML MML
ypm00460 (Undocumented) SBML MML
ypm00471 D-Glutamine and D-glutamate metabolism SBML MML
ypm00473 D-Alanine metabolism SBML MML
ypm00480 Glutathione metabolism SBML MML
ypm00500 Starch and sucrose metabolism SBML MML
ypm00520 Amino sugar and nucleotide sugar metabolism SBML MML
ypm00521 Streptomycin biosynthesis SBML MML
ypm00523 Polyketide sugar unit biosynthesis SBML MML
ypm00530 (Undocumented) SBML MML
ypm00540 Lipopolysaccharide biosynthesis SBML MML
ypm00550 Peptidoglycan biosynthesis SBML MML
ypm00561 Glycerolipid metabolism SBML MML
ypm00562 Inositol phosphate metabolism SBML MML
ypm00564 Glycerophospholipid metabolism SBML MML
ypm00590 Arachidonic acid metabolism SBML MML
ypm00592 alpha-Linolenic acid metabolism SBML MML
ypm00600 Sphingolipid metabolism SBML MML
ypm00620 Pyruvate metabolism SBML MML
ypm00624 1- and 2-Methylnaphthalene degradation SBML MML
ypm00627 1,4-Dichlorobenzene degradation SBML MML
ypm00628 Fluorene degradation SBML MML
ypm00630 Glyoxylate and dicarboxylate metabolism SBML MML
ypm00632 (Undocumented) SBML MML
ypm00633 Trinitrotoluene degradation SBML MML
ypm00640 Propanoate metabolism SBML MML
ypm00641 3-Chloroacrylic acid degradation SBML MML
ypm00642 Ethylbenzene degradation SBML MML
ypm00650 Butanoate metabolism SBML MML
ypm00660 C5-Branched dibasic acid metabolism SBML MML
ypm00670 One carbon pool by folate SBML MML
ypm00680 Methane metabolism SBML MML
ypm00710 (Undocumented) SBML MML
ypm00720 (Undocumented) SBML MML
ypm00730 Thiamine metabolism SBML MML
ypm00740 Riboflavin metabolism SBML MML
ypm00750 Vitamin B6 metabolism SBML MML
ypm00760 Nicotinate and nicotinamide metabolism SBML MML
ypm00770 Pantothenate and CoA biosynthesis SBML MML
ypm00780 Biotin metabolism SBML MML
ypm00785 Lipoic acid metabolism SBML MML
ypm00790 Folate biosynthesis SBML MML
ypm00860 Porphyrin and chlorophyll metabolism SBML MML
ypm00900 Terpenoid backbone biosynthesis SBML MML
ypm00903 (Undocumented) SBML MML
ypm00910 Nitrogen metabolism SBML MML
ypm00920 Sulfur metabolism SBML MML
ypm00930 Caprolactam degradation SBML MML
ypm00940 (Undocumented) SBML MML
ypm00950 (Undocumented) SBML MML
ypm00960 (Undocumented) SBML MML
ypm00970 Aminoacyl-tRNA biosynthesis SBML MML
ypm00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ypm00982 (Undocumented) SBML MML
ypm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.