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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism yps: Yersinia pseudotuberculosis IP32953

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
yps00010 Glycolysis / Gluconeogenesis SBML MML
yps00020 Citrate cycle (TCA cycle) SBML MML
yps00030 Pentose phosphate pathway SBML MML
yps00031 (Undocumented) SBML MML
yps00040 Pentose and glucuronate interconversions SBML MML
yps00051 Fructose and mannose metabolism SBML MML
yps00052 Galactose metabolism SBML MML
yps00053 Ascorbate and aldarate metabolism SBML MML
yps00061 Fatty acid biosynthesis SBML MML
yps00062 Fatty acid elongation in mitochondria SBML MML
yps00071 Fatty acid metabolism SBML MML
yps00100 (Undocumented) SBML MML
yps00120 (Undocumented) SBML MML
yps00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
yps00220 (Undocumented) SBML MML
yps00230 Purine metabolism SBML MML
yps00240 Pyrimidine metabolism SBML MML
yps00251 (Undocumented) SBML MML
yps00252 (Undocumented) SBML MML
yps00260 Glycine, serine and threonine metabolism SBML MML
yps00271 (Undocumented) SBML MML
yps00272 (Undocumented) SBML MML
yps00280 Valine, leucine and isoleucine degradation SBML MML
yps00281 Geraniol degradation SBML MML
yps00290 Valine, leucine and isoleucine biosynthesis SBML MML
yps00300 Lysine biosynthesis SBML MML
yps00310 Lysine degradation SBML MML
yps00330 Arginine and proline metabolism SBML MML
yps00340 Histidine metabolism SBML MML
yps00350 Tyrosine metabolism SBML MML
yps00360 Phenylalanine metabolism SBML MML
yps00361 gamma-Hexachlorocyclohexane degradation SBML MML
yps00362 (Undocumented) SBML MML
yps00364 Fluorobenzoate degradation SBML MML
yps00380 Tryptophan metabolism SBML MML
yps00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
yps00401 Novobiocin biosynthesis SBML MML
yps00410 beta-Alanine metabolism SBML MML
yps00430 Taurine and hypotaurine metabolism SBML MML
yps00450 Selenoamino acid metabolism SBML MML
yps00460 (Undocumented) SBML MML
yps00471 D-Glutamine and D-glutamate metabolism SBML MML
yps00473 D-Alanine metabolism SBML MML
yps00480 Glutathione metabolism SBML MML
yps00500 Starch and sucrose metabolism SBML MML
yps00520 Amino sugar and nucleotide sugar metabolism SBML MML
yps00521 Streptomycin biosynthesis SBML MML
yps00523 Polyketide sugar unit biosynthesis SBML MML
yps00530 (Undocumented) SBML MML
yps00540 Lipopolysaccharide biosynthesis SBML MML
yps00550 Peptidoglycan biosynthesis SBML MML
yps00561 Glycerolipid metabolism SBML MML
yps00562 Inositol phosphate metabolism SBML MML
yps00564 Glycerophospholipid metabolism SBML MML
yps00590 Arachidonic acid metabolism SBML MML
yps00592 alpha-Linolenic acid metabolism SBML MML
yps00600 Sphingolipid metabolism SBML MML
yps00620 Pyruvate metabolism SBML MML
yps00624 1- and 2-Methylnaphthalene degradation SBML MML
yps00627 1,4-Dichlorobenzene degradation SBML MML
yps00628 Fluorene degradation SBML MML
yps00630 Glyoxylate and dicarboxylate metabolism SBML MML
yps00632 (Undocumented) SBML MML
yps00633 Trinitrotoluene degradation SBML MML
yps00640 Propanoate metabolism SBML MML
yps00641 3-Chloroacrylic acid degradation SBML MML
yps00642 Ethylbenzene degradation SBML MML
yps00650 Butanoate metabolism SBML MML
yps00660 C5-Branched dibasic acid metabolism SBML MML
yps00670 One carbon pool by folate SBML MML
yps00680 Methane metabolism SBML MML
yps00710 (Undocumented) SBML MML
yps00720 (Undocumented) SBML MML
yps00730 Thiamine metabolism SBML MML
yps00740 Riboflavin metabolism SBML MML
yps00750 Vitamin B6 metabolism SBML MML
yps00760 Nicotinate and nicotinamide metabolism SBML MML
yps00770 Pantothenate and CoA biosynthesis SBML MML
yps00780 Biotin metabolism SBML MML
yps00785 Lipoic acid metabolism SBML MML
yps00790 Folate biosynthesis SBML MML
yps00860 Porphyrin and chlorophyll metabolism SBML MML
yps00900 Terpenoid backbone biosynthesis SBML MML
yps00903 (Undocumented) SBML MML
yps00910 Nitrogen metabolism SBML MML
yps00920 Sulfur metabolism SBML MML
yps00930 Caprolactam degradation SBML MML
yps00940 (Undocumented) SBML MML
yps00950 (Undocumented) SBML MML
yps00960 (Undocumented) SBML MML
yps00970 Aminoacyl-tRNA biosynthesis SBML MML
yps00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
yps00982 (Undocumented) SBML MML
yps00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.