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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ypy: Yersinia pseudotuberculosis YPIII

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ypy00010 Glycolysis / Gluconeogenesis SBML MML
ypy00020 Citrate cycle (TCA cycle) SBML MML
ypy00030 Pentose phosphate pathway SBML MML
ypy00031 (Undocumented) SBML MML
ypy00040 Pentose and glucuronate interconversions SBML MML
ypy00051 Fructose and mannose metabolism SBML MML
ypy00052 Galactose metabolism SBML MML
ypy00053 Ascorbate and aldarate metabolism SBML MML
ypy00061 Fatty acid biosynthesis SBML MML
ypy00062 Fatty acid elongation in mitochondria SBML MML
ypy00071 Fatty acid metabolism SBML MML
ypy00100 (Undocumented) SBML MML
ypy00120 (Undocumented) SBML MML
ypy00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ypy00150 Androgen and estrogen metabolism SBML MML
ypy00220 (Undocumented) SBML MML
ypy00230 Purine metabolism SBML MML
ypy00240 Pyrimidine metabolism SBML MML
ypy00251 (Undocumented) SBML MML
ypy00252 (Undocumented) SBML MML
ypy00260 Glycine, serine and threonine metabolism SBML MML
ypy00271 (Undocumented) SBML MML
ypy00272 (Undocumented) SBML MML
ypy00280 Valine, leucine and isoleucine degradation SBML MML
ypy00281 Geraniol degradation SBML MML
ypy00290 Valine, leucine and isoleucine biosynthesis SBML MML
ypy00300 Lysine biosynthesis SBML MML
ypy00310 Lysine degradation SBML MML
ypy00330 Arginine and proline metabolism SBML MML
ypy00340 Histidine metabolism SBML MML
ypy00350 Tyrosine metabolism SBML MML
ypy00360 Phenylalanine metabolism SBML MML
ypy00361 gamma-Hexachlorocyclohexane degradation SBML MML
ypy00362 (Undocumented) SBML MML
ypy00363 Bisphenol A degradation SBML MML
ypy00364 Fluorobenzoate degradation SBML MML
ypy00380 Tryptophan metabolism SBML MML
ypy00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ypy00401 Novobiocin biosynthesis SBML MML
ypy00410 beta-Alanine metabolism SBML MML
ypy00430 Taurine and hypotaurine metabolism SBML MML
ypy00450 Selenoamino acid metabolism SBML MML
ypy00460 (Undocumented) SBML MML
ypy00471 D-Glutamine and D-glutamate metabolism SBML MML
ypy00473 D-Alanine metabolism SBML MML
ypy00480 Glutathione metabolism SBML MML
ypy00500 Starch and sucrose metabolism SBML MML
ypy00520 Amino sugar and nucleotide sugar metabolism SBML MML
ypy00521 Streptomycin biosynthesis SBML MML
ypy00523 Polyketide sugar unit biosynthesis SBML MML
ypy00530 (Undocumented) SBML MML
ypy00540 Lipopolysaccharide biosynthesis SBML MML
ypy00550 Peptidoglycan biosynthesis SBML MML
ypy00561 Glycerolipid metabolism SBML MML
ypy00562 Inositol phosphate metabolism SBML MML
ypy00564 Glycerophospholipid metabolism SBML MML
ypy00590 Arachidonic acid metabolism SBML MML
ypy00592 alpha-Linolenic acid metabolism SBML MML
ypy00600 Sphingolipid metabolism SBML MML
ypy00620 Pyruvate metabolism SBML MML
ypy00624 1- and 2-Methylnaphthalene degradation SBML MML
ypy00626 Naphthalene and anthracene degradation SBML MML
ypy00627 1,4-Dichlorobenzene degradation SBML MML
ypy00628 Fluorene degradation SBML MML
ypy00630 Glyoxylate and dicarboxylate metabolism SBML MML
ypy00632 (Undocumented) SBML MML
ypy00633 Trinitrotoluene degradation SBML MML
ypy00640 Propanoate metabolism SBML MML
ypy00641 3-Chloroacrylic acid degradation SBML MML
ypy00642 Ethylbenzene degradation SBML MML
ypy00650 Butanoate metabolism SBML MML
ypy00660 C5-Branched dibasic acid metabolism SBML MML
ypy00670 One carbon pool by folate SBML MML
ypy00680 Methane metabolism SBML MML
ypy00710 (Undocumented) SBML MML
ypy00720 (Undocumented) SBML MML
ypy00730 Thiamine metabolism SBML MML
ypy00740 Riboflavin metabolism SBML MML
ypy00750 Vitamin B6 metabolism SBML MML
ypy00760 Nicotinate and nicotinamide metabolism SBML MML
ypy00770 Pantothenate and CoA biosynthesis SBML MML
ypy00780 Biotin metabolism SBML MML
ypy00790 Folate biosynthesis SBML MML
ypy00791 Atrazine degradation SBML MML
ypy00860 Porphyrin and chlorophyll metabolism SBML MML
ypy00900 Terpenoid backbone biosynthesis SBML MML
ypy00903 (Undocumented) SBML MML
ypy00910 Nitrogen metabolism SBML MML
ypy00920 Sulfur metabolism SBML MML
ypy00930 Caprolactam degradation SBML MML
ypy00940 (Undocumented) SBML MML
ypy00950 (Undocumented) SBML MML
ypy00960 (Undocumented) SBML MML
ypy00970 Aminoacyl-tRNA biosynthesis SBML MML
ypy00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ypy00982 (Undocumented) SBML MML
ypy00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.