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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00311: Penicillin and cephalosporin biosynthesis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aau00311 Arthrobacter aurescens SBML MML
aba00311 Acidobacteria bacterium SBML MML
abc00311 Acinetobacter baumannii ACICU SBML MML
aby00311 Acinetobacter baumannii AYE SBML MML
acb00311 Acinetobacter baumannii ATCC 17978 SBML MML
aci00311 Acinetobacter sp. ADP1 SBML MML
ade00311 Anaeromyxobacter dehalogenans 2CP-C SBML MML
afm00311 Aspergillus fumigatus SBML MML
aha00311 Aeromonas hydrophila SBML MML
ava00311 Anabaena variabilis SBML MML
azc00311 Azorhizobium caulinodans SBML MML
azo00311 Azoarcus sp. BH72 SBML MML
baa00311 Bacillus anthracis A2012 SBML MML
bam00311 Burkholderia cepacia SBML MML
ban00311 Bacillus anthracis Ames SBML MML
bar00311 Bacillus anthracis Ames 0581 SBML MML
bat00311 Bacillus anthracis Sterne SBML MML
bay00311 Bacillus amyloliquefaciens SBML MML
bba00311 Bdellovibrio bacteriovorus SBML MML
bca00311 Bacillus cereus ATCC 10987 SBML MML
bce00311 Bacillus cereus ATCC 14579 SBML MML
bch00311 Burkholderia cenocepacia HI2424 SBML MML
bcl00311 Bacillus clausii SBML MML
bcn00311 Burkholderia cenocepacia AU1054 SBML MML
bcz00311 Bacillus cereus ZK SBML MML
bid00311 Beijerinckia indica SBML MML
bld00311 Bacillus licheniformis DSM13 SBML MML
bli00311 Bacillus licheniformis ATCC 14580 SBML MML
bma00311 Burkholderia mallei ATCC 23344 SBML MML
bml00311 Burkholderia mallei NCTC 10229 SBML MML
bmn00311 Burkholderia mallei NCTC 10247 SBML MML
bmv00311 Burkholderia mallei SAVP1 SBML MML
bpd00311 Burkholderia pseudomallei 668 SBML MML
bph00311 Burkholderia phymatum SBML MML
bpl00311 Burkholderia pseudomallei 1106a SBML MML
bpm00311 Burkholderia pseudomallei 1710b SBML MML
bps00311 Burkholderia pseudomallei K96243 SBML MML
bpt00311 Bordetella petrii SBML MML
bpu00311 Bacillus pumilus SBML MML
bsu00311 Bacillus subtilis SBML MML
bte00311 Burkholderia thailandensis SBML MML
btk00311 Bacillus thuringiensis 97-27 SBML MML
btl00311 Bacillus thuringiensis Al Hakam SBML MML
bur00311 Burkholderia sp. 383 SBML MML
bwe00311 Bacillus weihenstephanensis SBML MML
cbd00311 Coxiella burnetii Dugway 5J108-111 SBML MML
cmi00311 Clavibacter michiganensis subsp. michiganensis SBML MML
cms00311 Clavibacter michiganensis subsp. sepedonicus SBML MML
cpe00311 Clostridium perfringens 13 SBML MML
cps00311 Colwellia psychrerythraea SBML MML
cvi00311 Chromobacterium violaceum SBML MML
cya00311 Cyanobacteria Yellowstone A-Prime SBML MML
cyb00311 Cyanobacteria Yellowstone B-Prime SBML MML
dac00311 Delftia acidovorans SBML MML
dbmo00311 Bombyx mori (silkmoth) SBML MML
dge00311 Deinococcus geothermalis SBML MML
dptm00311 (Undocumented) SBML MML
dtni00311 Tetraodon nigroviridis (green spotted puffer) SBML MML
ehan00311 Helianthus annuus (sunflower) (EST) SBML MML
elja00311 Lotus japonicus (lotus) (EST) SBML MML
eosa00311 Oryza sativa (rice) (EST) SBML MML
eosi00311 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00311 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epta00311 Pinus taeda (loblolly pine) (EST) SBML MML
esof00311 Saccharum officinarum (sugarcane) (EST) SBML MML
etae00311 Triticum aestivum (wheat) (EST) SBML MML
evvi00311 Vitis vinifera (wine grape) (EST) SBML MML
ezma00311 Zea mays (maize) (EST) SBML MML
fjo00311 Flavobacterium johnsoniae SBML MML
fph00311 Francisella philomiragia SBML MML
fta00311 Francisella tularensis subsp. holarctica FTNF002-00 SBML MML
ftm00311 Francisella tularensis subsp. mediasiatica FSC147 SBML MML
gbe00311 Granulobacter bethesdensis SBML MML
hau00311 Herpetosiphon aurantiacus SBML MML
hne00311 Hyphomonas neptunium SBML MML
kra00311 Kineococcus radiotolerans SBML MML
lbf00311 Leptospira biflexa serovar Patoc Patoc 1 (Ames) SBML MML
lbi00311 Leptospira biflexa serovar Patoc Patoc 1 (Paris) SBML MML
lch00311 Leptothrix cholodnii SBML MML
lil00311 Leptospira interrogans serovar lai SBML MML
lsp00311 Lysinibacillus sphaericus SBML MML
mar00311 Microcystis aeruginosa SBML MML
mav00311 Mycobacterium avium 104 SBML MML
mbb00311 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbo00311 Mycobacterium bovis AF2122/97 SBML MML
mca00311 Methylococcus capsulatus SBML MML
met00311 Methylobacterium sp. 4-46 SBML MML
mgm00311 Magnetococcus sp. MC-1 SBML MML
mlo00311 Mesorhizobium loti SBML MML
mmi00311 Mycobacterium marinum M SBML MML
mmr00311 Maricaulis maris SBML MML
mra00311 Mycobacterium tuberculosis H37Ra SBML MML
mrd00311 Methylobacterium radiotolerans SBML MML
msm00311 Mycobacterium smegmatis SBML MML
mtc00311 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00311 Mycobacterium tuberculosis F11 SBML MML
mtu00311 Mycobacterium tuberculosis H37Rv SBML MML
mul00311 Mycobacterium ulcerans SBML MML
mxa00311 Myxococcus xanthus SBML MML
nca00311 Nocardioides sp. JS614 SBML MML
net00311 Nitrosomonas eutropha SBML MML
oan00311 Ochrobactrum anthropi SBML MML
oih00311 Oceanobacillus iheyensis SBML MML
ote00311 Opitutus terrae SBML MML
pat00311 Pseudoalteromonas atlantica SBML MML
pau00311 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pde00311 Paracoccus denitrificans SBML MML
pen00311 Pseudomonas entomophila SBML MML
pme00311 Prochlorococcus marinus NATL1A SBML MML
pmf00311 Prochlorococcus marinus MIT 9303 SBML MML
pmj00311 Prochlorococcus marinus MIT 9211 SBML MML
pmy00311 Pseudomonas mendocina SBML MML
pnu00311 Polynucleobacter sp. QLW-P1DMWA-1 SBML MML
pol00311 Polaromonas sp. JS666 SBML MML
rba00311 Rhodopirellula baltica SBML MML
rca00311 Roseiflexus castenholzii DSM13941 SBML MML
rde00311 Roseobacter denitrificans SBML MML
reh00311 Ralstonia eutropha H16 SBML MML
reu00311 Ralstonia eutropha JMP134 SBML MML
rfe00311 Rickettsia felis SBML MML
rfr00311 Rhodoferax ferrireducens SBML MML
rha00311 Rhodococcus sp. RHA1 SBML MML
rle00311 Rhizobium leguminosarum SBML MML
rme00311 Ralstonia metallidurans SBML MML
rrs00311 Roseiflexus sp. RS-1 SBML MML
rru00311 Rhodospirillum rubrum SBML MML
rso00311 Ralstonia solanacearum SBML MML
rsp00311 Rhodobacter sphaeroides 2.4.1 SBML MML
rxy00311 Rubrobacter xylanophilus SBML MML
sal00311 Sphingopyxis alaskensis SBML MML
saq00311 Salinispora arenicola SBML MML
saz00311 Shewanella amazonensis SBML MML
sbc00311 Shigella boydii CDC 3083-94 SBML MML
sbo00311 Shigella boydii Sb227 SBML MML
scl00311 Sorangium cellulosum SBML MML
sco00311 Streptomyces coelicolor SBML MML
sdn00311 Shewanella denitrificans SBML MML
sen00311 Saccharopolyspora erythraea SBML MML
sgr00311 Streptomyces griseus SBML MML
shl00311 Shewanella halifaxensis SBML MML
shn00311 Shewanella sp. ANA-3 SBML MML
sil00311 Ruegeria pomeroyi SBML MML
sit00311 Silicibacter sp. TM1040 SBML MML
slo00311 Shewanella loihica SBML MML
sma00311 Streptomyces avermitilis SBML MML
sml00311 Stenotrophomonas maltophilia SBML MML
son00311 Shewanella oneidensis SBML MML
spe00311 Serratia proteamaculans SBML MML
spl00311 Shewanella pealeana SBML MML
ssa00311 Streptococcus sanguinis SBML MML
sse00311 Shewanella sediminis SBML MML
sth00311 Symbiobacterium thermophilum SBML MML
stp00311 Salinispora tropica SBML MML
sus00311 Solibacter usitatus SBML MML
swd00311 Shewanella woodyi ATCC 51908 SBML MML
syf00311 Synechococcus elongatus PCC7942 SBML MML
syn00311 Synechocystis sp. PCC6803 SBML MML
tet00311 Tetrahymena thermophila SBML MML
vei00311 Verminephrobacter eiseniae SBML MML
vfi00311 Vibrio fischeri SBML MML
vha00311 Vibrio harveyi SBML MML
vpa00311 Vibrio parahaemolyticus SBML MML
xac00311 Xanthomonas axonopodis SBML MML
xau00311 Xanthobacter autotrophicus SBML MML
xcb00311 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00311 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00311 Xanthomonas campestris pv. vesicatoria SBML MML
xom00311 Xanthomonas oryzae MAFF311018 SBML MML
xoo00311 Xanthomonas oryzae KACC10331 SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.