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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00472: D-Arginine and D-ornithine metabolism

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
abo00472 Alcanivorax borkumensis SBML MML
acr00472 Acidiphilium cryptum JF-5 SBML MML
aeh00472 Alkalilimnicola ehrlichei SBML MML
afm00472 Aspergillus fumigatus SBML MML
aga00472 Anopheles gambiae (mosquito) SBML MML
amt00472 Alkaliphilus metalliredigens SBML MML
ang00472 Aspergillus niger SBML MML
atc00472 Agrobacterium tumefaciens C58 (Cereon) SBML MML
atu00472 Agrobacterium tumefaciens C58 SBML MML
azc00472 Azorhizobium caulinodans SBML MML
azo00472 Azoarcus sp. BH72 SBML MML
baa00472 Bacillus anthracis A2012 SBML MML
bac00472 Burkholderia ambifaria MC40-6 SBML MML
bam00472 Burkholderia cepacia SBML MML
ban00472 Bacillus anthracis Ames SBML MML
bar00472 Bacillus anthracis Ames 0581 SBML MML
bat00472 Bacillus anthracis Sterne SBML MML
bav00472 Bordetella avium SBML MML
bay00472 Bacillus amyloliquefaciens SBML MML
bbr00472 Bordetella bronchiseptica SBML MML
bbt00472 Bradyrhizobium sp. BTAi1 SBML MML
bca00472 Bacillus cereus ATCC 10987 SBML MML
bce00472 Bacillus cereus ATCC 14579 SBML MML
bch00472 Burkholderia cenocepacia HI2424 SBML MML
bcl00472 Bacillus clausii SBML MML
bcm00472 Burkholderia cenocepacia MC0-3 SBML MML
bcn00472 Burkholderia cenocepacia AU1054 SBML MML
bcs00472 Brucella canis SBML MML
bcy00472 Bacillus cytotoxis NVH 391-98 SBML MML
bcz00472 Bacillus cereus ZK SBML MML
bha00472 Bacillus halodurans SBML MML
bid00472 Beijerinckia indica SBML MML
bja00472 Bradyrhizobium japonicum SBML MML
bld00472 Bacillus licheniformis DSM13 SBML MML
bli00472 Bacillus licheniformis ATCC 14580 SBML MML
bma00472 Burkholderia mallei ATCC 23344 SBML MML
bmb00472 Brucella abortus 9-941 SBML MML
bmc00472 Brucella abortus S19 SBML MML
bme00472 Brucella melitensis 16M SBML MML
bmf00472 Brucella melitensis biovar Abortus SBML MML
bml00472 Burkholderia mallei NCTC 10229 SBML MML
bmn00472 Burkholderia mallei NCTC 10247 SBML MML
bms00472 Brucella suis 1330 SBML MML
bmt00472 Brucella suis ATCC 23445 SBML MML
bmu00472 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00472 Burkholderia mallei SAVP1 SBML MML
bov00472 Brucella ovis SBML MML
bpa00472 Bordetella parapertussis SBML MML
bpd00472 Burkholderia pseudomallei 668 SBML MML
bpe00472 Bordetella pertussis SBML MML
bpl00472 Burkholderia pseudomallei 1106a SBML MML
bpm00472 Burkholderia pseudomallei 1710b SBML MML
bps00472 Burkholderia pseudomallei K96243 SBML MML
bpt00472 Bordetella petrii SBML MML
bpu00472 Bacillus pumilus SBML MML
bra00472 Bradyrhizobium sp. ORS278 SBML MML
bsu00472 Bacillus subtilis SBML MML
bta00472 Bos taurus (cow) SBML MML
bte00472 Burkholderia thailandensis SBML MML
btk00472 Bacillus thuringiensis 97-27 SBML MML
btl00472 Bacillus thuringiensis Al Hakam SBML MML
bur00472 Burkholderia sp. 383 SBML MML
bvi00472 Burkholderia vietnamiensis SBML MML
bwe00472 Bacillus weihenstephanensis SBML MML
bxe00472 Burkholderia xenovorans SBML MML
cac00472 Clostridium acetobutylicum SBML MML
cak00472 Caulobacter sp. K31 SBML MML
cbe00472 Clostridium beijerinckii SBML MML
cco00472 Campylobacter concisus 13826 SBML MML
ccr00472 Caulobacter crescentus CB15 SBML MML
ccv00472 Campylobacter curvus SBML MML
cel00472 Caenorhabditis elegans (nematode) SBML MML
cfa00472 Canis familiaris (dog) SBML MML
cff00472 Campylobacter fetus SBML MML
cha00472 Campylobacter hominis ATCC BAA-381 SBML MML
daag00472 (Undocumented) SBML MML
dar00472 Dechloromonas aromatica SBML MML
dbmo00472 Bombyx mori (silkmoth) SBML MML
dcbr00472 (Undocumented) SBML MML
dcin00472 (Undocumented) SBML MML
decb00472 (Undocumented) SBML MML
dha00472 Debaryomyces hansenii SBML MML
dme00472 Drosophila melanogaster (fruit fly) SBML MML
dptm00472 (Undocumented) SBML MML
dsh00472 Dinoroseobacter shibae SBML MML
dsy00472 Desulfitobacterium hafniense Y51 SBML MML
dtps00472 (Undocumented) SBML MML
eba00472 Aromatoleum aromaticum EbN1 SBML MML
eca00472 Erwinia carotovora SBML MML
eees00472 Euphorbia esula (leafy spurge) (EST) SBML MML
efar00472 Festuca arundinacea (tall fescue) (EST) SBML MML
ehan00472 Helianthus annuus (sunflower) (EST) SBML MML
elja00472 Lotus japonicus (lotus) (EST) SBML MML
elvi00472 Lactuca virosa (wild lettuce) (EST) SBML MML
enta00472 Nicotiana tabacum (tobacco) (EST) SBML MML
eosa00472 Oryza sativa (rice) (EST) SBML MML
eosi00472 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00472 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epop00472 Populus trichocarpa (black cottonwood) (EST) SBML MML
esof00472 Saccharum officinarum (sugarcane) (EST) SBML MML
espu00472 Strongylocentrotus purpuratus (purple sea urchin) (EST) SBML MML
etae00472 Triticum aestivum (wheat) (EST) SBML MML
ezma00472 Zea mays (maize) (EST) SBML MML
fgr00472 Fusarium graminearum SBML MML
gbe00472 Granulobacter bethesdensis SBML MML
gga00472 Gallus gallus (chicken) SBML MML
gka00472 Geobacillus kaustophilus SBML MML
har00472 Herminiimonas arsenicoxydans SBML MML
hha00472 Halorhodospira halophila SBML MML
hne00472 Hyphomonas neptunium SBML MML
hsa00472 Homo sapiens (human) SBML MML
jan00472 Jannaschia sp. CCS1 SBML MML
kla00472 Kluyveromyces lactis SBML MML
lch00472 Leptothrix cholodnii SBML MML
lin00472 Listeria innocua SBML MML
lmf00472 Listeria monocytogenes F2365 SBML MML
lmo00472 Listeria monocytogenes EGD-e SBML MML
lpc00472 Legionella pneumophila Corby SBML MML
lpf00472 Legionella pneumophila Lens SBML MML
lpn00472 Legionella pneumophila Philadelphia 1 SBML MML
lpp00472 Legionella pneumophila Paris SBML MML
lsl00472 Lactobacillus salivarius SBML MML
lsp00472 Lysinibacillus sphaericus SBML MML
lwe00472 Listeria welshimeri SLCC5334 SBML MML
mav00472 Mycobacterium avium 104 SBML MML
mbb00472 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbo00472 Mycobacterium bovis AF2122/97 SBML MML
mbr00472 Monosiga brevicollis SBML MML
mca00472 Methylococcus capsulatus SBML MML
mcc00472 Macaca mulatta (rhesus monkey) SBML MML
mdo00472 Monodelphis domestica (opossum) SBML MML
mes00472 Mesorhizobium sp. BNC1 SBML MML
met00472 Methylobacterium sp. 4-46 SBML MML
mex00472 Methylobacterium extorquens SBML MML
mfa00472 Methylobacillus flagellatus SBML MML
mgl00472 Malassezia globosa SBML MML
mlo00472 Mesorhizobium loti SBML MML
mmi00472 Mycobacterium marinum M SBML MML
mmr00472 Maricaulis maris SBML MML
mms00472 Minibacterium massiliensis SBML MML
mmu00472 Mus musculus (mouse) SBML MML
mpt00472 Methylibium petroleiphilum SBML MML
mra00472 Mycobacterium tuberculosis H37Ra SBML MML
mrd00472 Methylobacterium radiotolerans SBML MML
mtc00472 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00472 Mycobacterium tuberculosis F11 SBML MML
mtu00472 Mycobacterium tuberculosis H37Rv SBML MML
mul00472 Mycobacterium ulcerans SBML MML
nca00472 Nocardioides sp. JS614 SBML MML
ncr00472 Neurospora crassa SBML MML
net00472 Nitrosomonas eutropha SBML MML
neu00472 Nitrosomonas europaea SBML MML
nha00472 Nitrobacter hamburgensis SBML MML
nmu00472 Nitrosospira multiformis SBML MML
noc00472 Nitrosococcus oceani SBML MML
nwi00472 Nitrobacter winogradskyi SBML MML
oaa00472 Ornithorhynchus anatinus (platypus) SBML MML
oan00472 Ochrobactrum anthropi SBML MML
oih00472 Oceanobacillus iheyensis SBML MML
pan00472 Podospora anserina SBML MML
par00472 Psychrobacter arcticum SBML MML
pat00472 Pseudoalteromonas atlantica SBML MML
pla00472 Parvibaculum lavamentivorans SBML MML
pmb00472 Prochlorococcus marinus AS9601 SBML MML
pmc00472 Prochlorococcus marinus MIT 9515 SBML MML
pme00472 Prochlorococcus marinus NATL1A SBML MML
pmf00472 Prochlorococcus marinus MIT 9303 SBML MML
pmg00472 Prochlorococcus marinus MIT 9301 SBML MML
pmh00472 Prochlorococcus marinus MIT 9215 SBML MML
pmj00472 Prochlorococcus marinus MIT 9211 SBML MML
pna00472 Polaromonas naphthalenivorans SBML MML
pol00472 Polaromonas sp. JS666 SBML MML
ptr00472 Pan troglodytes (chimpanzee) SBML MML
pub00472 Candidatus Pelagibacter ubique SBML MML
rde00472 Roseobacter denitrificans SBML MML
rec00472 Rhizobium etli CIAT 652 SBML MML
reh00472 Ralstonia eutropha H16 SBML MML
ret00472 Rhizobium etli CFN 42 SBML MML
reu00472 Ralstonia eutropha JMP134 SBML MML
rfr00472 Rhodoferax ferrireducens SBML MML
rle00472 Rhizobium leguminosarum SBML MML
rma00472 Candidatus Ruthia magnifica SBML MML
rme00472 Ralstonia metallidurans SBML MML
rno00472 Rattus norvegicus (rat) SBML MML
rpa00472 Rhodopseudomonas palustris CGA009 SBML MML
rpd00472 Rhodopseudomonas palustris BisB5 SBML MML
rpe00472 Rhodopseudomonas palustris BisA53 SBML MML
rpt00472 Rhodopseudomonas palustris TIE-1 SBML MML
rru00472 Rhodospirillum rubrum SBML MML
rso00472 Ralstonia solanacearum SBML MML
rsp00472 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00472 Rhodobacter sphaeroides ATCC 17025 SBML MML
rxy00472 Rubrobacter xylanophilus SBML MML
saa00472 Staphylococcus aureus USA300 SBML MML
sab00472 Staphylococcus aureus RF122 SBML MML
sac00472 Staphylococcus aureus COL SBML MML
sae00472 Staphylococcus aureus Newman SBML MML
sah00472 Staphylococcus aureus JH1 SBML MML
saj00472 Staphylococcus aureus JH9 SBML MML
sam00472 Staphylococcus aureus MW2 SBML MML
sao00472 Staphylococcus aureus NCTC8325 SBML MML
sar00472 Staphylococcus aureus MRSA252 SBML MML
sas00472 Staphylococcus aureus MSSA476 SBML MML
sau00472 Staphylococcus aureus N315 SBML MML
sav00472 Staphylococcus aureus Mu50 SBML MML
saw00472 Staphylococcus aureus Mu3 SBML MML
sax00472 Staphylococcus aureus USA300 TCH1516 SBML MML
sen00472 Saccharopolyspora erythraea SBML MML
sep00472 Staphylococcus epidermidis ATCC 12228 SBML MML
ser00472 Staphylococcus epidermidis RP62A SBML MML
sha00472 Staphylococcus haemolyticus SBML MML
sil00472 Ruegeria pomeroyi SBML MML
sit00472 Silicibacter sp. TM1040 SBML MML
smd00472 Sinorhizobium medicae SBML MML
sme00472 Sinorhizobium meliloti SBML MML
sru00472 Salinibacter ruber SBML MML
ssc00472 Sus scrofa (pig) SBML MML
ssp00472 Staphylococcus saprophyticus SBML MML
sth00472 Symbiobacterium thermophilum SBML MML
tbd00472 Thiobacillus denitrificans SBML MML
tca00472 Tribolium castaneum (red flour beetle) SBML MML
tcx00472 Thiomicrospira crunogena SBML MML
tet00472 Tetrahymena thermophila SBML MML
uma00472 Ustilago maydis SBML MML
vok00472 Candidatus Vesicomyosocius okutanii SBML MML
vpo00472 Vanderwaltozyma polyspora SBML MML
xau00472 Xanthobacter autotrophicus SBML MML
yli00472 Yarrowia lipolytica SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.