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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00520: Amino sugar and nucleotide sugar metabolism

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aae00520 Aquifex aeolicus SBML MML
aau00520 Arthrobacter aurescens SBML MML
aav00520 Acidovorax avenae SBML MML
aba00520 Acidobacteria bacterium SBML MML
abc00520 Acinetobacter baumannii ACICU SBML MML
abm00520 Acinetobacter baumannii SDF SBML MML
abo00520 Alcanivorax borkumensis SBML MML
abu00520 Arcobacter butzleri SBML MML
aby00520 Acinetobacter baumannii AYE SBML MML
acb00520 Acinetobacter baumannii ATCC 17978 SBML MML
ace00520 Acidothermus cellulolyticus SBML MML
aci00520 Acinetobacter sp. ADP1 SBML MML
acl00520 Acholeplasma laidlawii SBML MML
acr00520 Acidiphilium cryptum JF-5 SBML MML
ade00520 Anaeromyxobacter dehalogenans 2CP-C SBML MML
aeh00520 Alkalilimnicola ehrlichei SBML MML
afm00520 Aspergillus fumigatus SBML MML
afu00520 Archaeoglobus fulgidus SBML MML
afw00520 Anaeromyxobacter sp. Fw109-5 SBML MML
aga00520 Anopheles gambiae (mosquito) SBML MML
aha00520 Aeromonas hydrophila SBML MML
ajs00520 Acidovorax sp. JS42 SBML MML
amr00520 Acaryochloris marina SBML MML
amt00520 Alkaliphilus metalliredigens SBML MML
ana00520 Anabaena sp. PCC7120 SBML MML
ang00520 Aspergillus niger SBML MML
ani00520 Aspergillus nidulans SBML MML
aoe00520 Alkaliphilus oremlandii SBML MML
aor00520 Aspergillus oryzae SBML MML
apa00520 Actinobacillus pleuropneumoniae AP76 (serotype 7) SBML MML
ape00520 Aeropyrum pernix SBML MML
apj00520 Actinobacillus pleuropneumoniae JL03 (serotype 3) SBML MML
apl00520 Actinobacillus pleuropneumoniae L20 (serotype 5b) SBML MML
art00520 Arthrobacter sp. FB24 SBML MML
asa00520 Aeromonas salmonicida SBML MML
asu00520 Actinobacillus succinogenes SBML MML
atc00520 Agrobacterium tumefaciens C58 (Cereon) SBML MML
ath00520 Arabidopsis thaliana (thale cress) SBML MML
atu00520 Agrobacterium tumefaciens C58 SBML MML
ava00520 Anabaena variabilis SBML MML
azc00520 Azorhizobium caulinodans SBML MML
azo00520 Azoarcus sp. BH72 SBML MML
baa00520 Bacillus anthracis A2012 SBML MML
bac00520 Burkholderia ambifaria MC40-6 SBML MML
bad00520 Bifidobacterium adolescentis SBML MML
bam00520 Burkholderia cepacia SBML MML
ban00520 Bacillus anthracis Ames SBML MML
bar00520 Bacillus anthracis Ames 0581 SBML MML
bat00520 Bacillus anthracis Sterne SBML MML
bav00520 Bordetella avium SBML MML
bay00520 Bacillus amyloliquefaciens SBML MML
bba00520 Bdellovibrio bacteriovorus SBML MML
bbr00520 Bordetella bronchiseptica SBML MML
bbt00520 Bradyrhizobium sp. BTAi1 SBML MML
bca00520 Bacillus cereus ATCC 10987 SBML MML
bce00520 Bacillus cereus ATCC 14579 SBML MML
bch00520 Burkholderia cenocepacia HI2424 SBML MML
bcl00520 Bacillus clausii SBML MML
bcm00520 Burkholderia cenocepacia MC0-3 SBML MML
bcn00520 Burkholderia cenocepacia AU1054 SBML MML
bcs00520 Brucella canis SBML MML
bcy00520 Bacillus cytotoxis NVH 391-98 SBML MML
bcz00520 Bacillus cereus ZK SBML MML
bfr00520 Bacteroides fragilis YCH46 SBML MML
bfs00520 Bacteroides fragilis NCTC9343 SBML MML
bha00520 Bacillus halodurans SBML MML
bid00520 Beijerinckia indica SBML MML
bja00520 Bradyrhizobium japonicum SBML MML
bld00520 Bacillus licheniformis DSM13 SBML MML
bli00520 Bacillus licheniformis ATCC 14580 SBML MML
blj00520 Bifidobacterium longum DJO10A SBML MML
blo00520 Bifidobacterium longum NCC2705 SBML MML
bma00520 Burkholderia mallei ATCC 23344 SBML MML
bmb00520 Brucella abortus 9-941 SBML MML
bmc00520 Brucella abortus S19 SBML MML
bme00520 Brucella melitensis 16M SBML MML
bmf00520 Brucella melitensis biovar Abortus SBML MML
bml00520 Burkholderia mallei NCTC 10229 SBML MML
bmn00520 Burkholderia mallei NCTC 10247 SBML MML
bms00520 Brucella suis 1330 SBML MML
bmt00520 Brucella suis ATCC 23445 SBML MML
bmu00520 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00520 Burkholderia mallei SAVP1 SBML MML
bmy00520 Brugia malayi (filaria) SBML MML
bov00520 Brucella ovis SBML MML
bpa00520 Bordetella parapertussis SBML MML
bpd00520 Burkholderia pseudomallei 668 SBML MML
bpe00520 Bordetella pertussis SBML MML
bph00520 Burkholderia phymatum SBML MML
bpl00520 Burkholderia pseudomallei 1106a SBML MML
bpm00520 Burkholderia pseudomallei 1710b SBML MML
bps00520 Burkholderia pseudomallei K96243 SBML MML
bpt00520 Bordetella petrii SBML MML
bpu00520 Bacillus pumilus SBML MML
bra00520 Bradyrhizobium sp. ORS278 SBML MML
bsu00520 Bacillus subtilis SBML MML
bta00520 Bos taurus (cow) SBML MML
bte00520 Burkholderia thailandensis SBML MML
bth00520 Bacteroides thetaiotaomicron SBML MML
btk00520 Bacillus thuringiensis 97-27 SBML MML
btl00520 Bacillus thuringiensis Al Hakam SBML MML
bur00520 Burkholderia sp. 383 SBML MML
bvi00520 Burkholderia vietnamiensis SBML MML
bvu00520 Bacteroides vulgatus SBML MML
bwe00520 Bacillus weihenstephanensis SBML MML
bxe00520 Burkholderia xenovorans SBML MML
cac00520 Clostridium acetobutylicum SBML MML
cak00520 Caulobacter sp. K31 SBML MML
cau00520 Chloroflexus aurantiacus SBML MML
cba00520 Clostridium botulinum A ATCC 19397 SBML MML
cbb00520 Clostridium botulinum B1 Okra SBML MML
cbd00520 Coxiella burnetii Dugway 5J108-111 SBML MML
cbe00520 Clostridium beijerinckii SBML MML
cbf00520 Clostridium botulinum F Langeland SBML MML
cbh00520 Clostridium botulinum A Hall SBML MML
cbk00520 Clostridium botulinum B Eklund 17B SBML MML
cbl00520 Clostridium botulinum A3 Loch Maree SBML MML
cbo00520 Clostridium botulinum A ATCC 3502 SBML MML
cbs00520 Coxiella burnetii RSA 331 SBML MML
cbu00520 Coxiella burnetii RSA 493 SBML MML
cch00520 Chlorobium chlorochromatii SBML MML
cco00520 Campylobacter concisus 13826 SBML MML
ccr00520 Caulobacter crescentus CB15 SBML MML
ccv00520 Campylobacter curvus SBML MML
cdf00520 Clostridium difficile SBML MML
cdi00520 Corynebacterium diphtheriae SBML MML
cef00520 Corynebacterium efficiens SBML MML
cel00520 Caenorhabditis elegans (nematode) SBML MML
cfa00520 Canis familiaris (dog) SBML MML
cff00520 Campylobacter fetus SBML MML
cgb00520 Corynebacterium glutamicum ATCC 13032 (Bielefeld) SBML MML
cgl00520 Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) SBML MML
cgt00520 Corynebacterium glutamicum R SBML MML
cha00520 Campylobacter hominis ATCC BAA-381 SBML MML
cho00520 Cryptosporidium hominis SBML MML
chu00520 Cytophaga hutchinsonii SBML MML
chy00520 Carboxydothermus hydrogenoformans SBML MML
cja00520 Cellvibrio japonicus SBML MML
cjd00520 Campylobacter jejuni subsp. doylei 269.97 SBML MML
cje00520 Campylobacter jejuni NCTC11168 SBML MML
cjj00520 Campylobacter jejuni 81-176 SBML MML
cjk00520 Corynebacterium jeikeium SBML MML
cjr00520 Campylobacter jejuni RM1221 SBML MML
cju00520 Campylobacter jejuni 81116 SBML MML
ckl00520 Clostridium kluyveri DSM 555 SBML MML
cko00520 Citrobacter koseri ATCC BAA-895 SBML MML
cma00520 Caldivirga maquilingensis SBML MML
cme00520 Cyanidioschyzon merolae SBML MML
cmi00520 Clavibacter michiganensis subsp. michiganensis SBML MML
cms00520 Clavibacter michiganensis subsp. sepedonicus SBML MML
cnb00520 Cryptococcus neoformans B-3501A SBML MML
cne00520 Cryptococcus neoformans JEC21 SBML MML
cno00520 Clostridium novyi SBML MML
cpb00520 Chlorobium phaeobacteroides BS1 SBML MML
cpe00520 Clostridium perfringens 13 SBML MML
cpf00520 Clostridium perfringens ATCC 13124 SBML MML
cph00520 Chlorobium phaeobacteroides DSM 266 SBML MML
cpr00520 Clostridium perfringens SM101 SBML MML
cps00520 Colwellia psychrerythraea SBML MML
cpy00520 Clostridium phytofermentans SBML MML
cre00520 Chlamydomonas reinhardtii SBML MML
csa00520 Chromohalobacter salexigens SBML MML
csc00520 Caldicellulosiruptor saccharolyticus SBML MML
ctc00520 Clostridium tetani E88 SBML MML
cte00520 Chlorobaculum tepidum SBML MML
cth00520 Clostridium thermocellum SBML MML
cti00520 Cupriavidus taiwanensis SBML MML
cur00520 Corynebacterium urealyticum SBML MML
cvi00520 Chromobacterium violaceum SBML MML
cya00520 Cyanobacteria Yellowstone A-Prime SBML MML
cyb00520 Cyanobacteria Yellowstone B-Prime SBML MML
cyt00520 Cyanothece sp. ATCC 51142 SBML MML
daag00520 (Undocumented) SBML MML
dac00520 Delftia acidovorans SBML MML
dame00520 (Undocumented) SBML MML
dar00520 Dechloromonas aromatica SBML MML
dau00520 Candidatus Desulforudis audaxviator SBML MML
dbmo00520 Bombyx mori (silkmoth) SBML MML
dcbr00520 (Undocumented) SBML MML
dcin00520 (Undocumented) SBML MML
dde00520 Desulfovibrio desulfuricans G20 SBML MML
ddi00520 Dictyostelium discoideum SBML MML
deb00520 Dehalococcoides sp. BAV1 SBML MML
decb00520 (Undocumented) SBML MML
det00520 Dehalococcoides ethenogenes SBML MML
dfru00520 Fugu rubripes (Japanese puffer fish) SBML MML
dge00520 Deinococcus geothermalis SBML MML
dha00520 Debaryomyces hansenii SBML MML
dkwa00520 Kluyveromyces waltii SBML MML
dme00520 Drosophila melanogaster (fruit fly) SBML MML
dno00520 Dichelobacter nodosus SBML MML
dol00520 Candidatus Desulfococcus oleovorans SBML MML
dola00520 Oryzias latipes (Japanese medaka) SBML MML
dota00520 Ostreococcus tauri SBML MML
dpo00520 Drosophila pseudoobscura pseudoobscura SBML MML
dpop00520 (Undocumented) SBML MML
dps00520 Desulfotalea psychrophila SBML MML
dptm00520 (Undocumented) SBML MML
dra00520 Deinococcus radiodurans SBML MML
dre00520 Danio rerio (zebrafish) SBML MML
drm00520 Desulfotomaculum reducens SBML MML
dsba00520 Saccharomyces bayanus SBML MML
dsh00520 Dinoroseobacter shibae SBML MML
dsmi00520 Saccharomyces mikatae SBML MML
dspd00520 (Undocumented) SBML MML
dsy00520 Desulfitobacterium hafniense Y51 SBML MML
dtni00520 Tetraodon nigroviridis (green spotted puffer) SBML MML
dtps00520 (Undocumented) SBML MML
dvl00520 Desulfovibrio vulgaris DP4 SBML MML
dvu00520 Desulfovibrio vulgaris Hildenborough SBML MML
dvvi00520 (Undocumented) SBML MML
eacp00520 (Undocumented) SBML MML
eath00520 Arabidopsis thaliana (thale cress) (EST) SBML MML
eba00520 Aromatoleum aromaticum EbN1 SBML MML
ebna00520 Brassica napus (rape) (EST) SBML MML
ebvl00520 Beta vulgaris (beet) (EST) SBML MML
eca00520 Erwinia carotovora SBML MML
ecan00520 Capsicum annuum (chile pepper) (EST) SBML MML
ecc00520 Escherichia coli CFT073 (UPEC) SBML MML
ecd00520 Escherichia coli K-12 DH10B SBML MML
ece00520 Escherichia coli O157 EDL933 (EHEC) SBML MML
eci00520 Escherichia coli UTI89 (UPEC) SBML MML
ecj00520 Escherichia coli K-12 W3110 SBML MML
ecl00520 Escherichia coli ATCC 8739 SBML MML
ecm00520 Escherichia coli SECEC SBML MML
eco00520 Escherichia coli K-12 MG1655 SBML MML
ecp00520 Escherichia coli 536 (UPEC) SBML MML
ecs00520 Escherichia coli O157 Sakai (EHEC) SBML MML
ecsi00520 Citrus sinensis (Valencia orange) (EST) SBML MML
ecsv00520 Ciona savignyi (EST) SBML MML
ecv00520 Escherichia coli APEC O1 SBML MML
ecw00520 Escherichia coli E24377A SBML MML
ecx00520 Escherichia coli HS SBML MML
eees00520 Euphorbia esula (leafy spurge) (EST) SBML MML
efa00520 Enterococcus faecalis SBML MML
efar00520 Festuca arundinacea (tall fescue) (EST) SBML MML
egar00520 Gossypium arboreum (tree cotton) (EST) SBML MML
eghi00520 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00520 Glycine max (soybean) (EST) SBML MML
egra00520 Gossypium raimondii (EST) SBML MML
ehan00520 Helianthus annuus (sunflower) (EST) SBML MML
ehi00520 Entamoeba histolytica SBML MML
ehvu00520 Hordeum vulgare (barley) (EST) SBML MML
eini00520 Ipomoea nil (Japanese morning glory) (EST) SBML MML
eli00520 Erythrobacter litoralis SBML MML
elja00520 Lotus japonicus (lotus) (EST) SBML MML
elpe00520 Lactuca perennis (blue lettuce) (EST) SBML MML
elsi00520 Lactuca saligna (willow-leaf lettuce) (EST) SBML MML
elst00520 Lactuca sativa (lettuce) (EST) SBML MML
elvi00520 Lactuca virosa (wild lettuce) (EST) SBML MML
emec00520 Manihot esculenta (cassava) (EST) SBML MML
emte00520 Molgula tectiformis (EST) SBML MML
emtr00520 Medicago truncatula (barrel medic) (EST) SBML MML
enbe00520 Nicotiana benthamiana (EST) SBML MML
ent00520 Enterobacter sp. 638 SBML MML
enta00520 Nicotiana tabacum (tobacco) (EST) SBML MML
eosa00520 Oryza sativa (rice) (EST) SBML MML
eosi00520 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00520 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00520 Picea glauca (white spruce) (EST) SBML MML
epop00520 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppa00520 (Undocumented) SBML MML
eppi00520 Pinus pinaster (maritime pine) (EST) SBML MML
eppp00520 Physcomitrella patens subsp. patens (EST) SBML MML
epps00520 Prunus persica (peach) (EST) SBML MML
epsi00520 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00520 Pinus taeda (loblolly pine) (EST) SBML MML
eptp00520 Populus tremula (European aspen) (EST) SBML MML
esa00520 Enterobacter sakazakii SBML MML
esbi00520 Sorghum bicolor (sorghum) (EST) SBML MML
esi00520 Exiguobacterium sibiricum SBML MML
esja00520 Schistosoma japonicum (fluke) (EST) SBML MML
esly00520 Solanum lycopersicum (tomato) (EST) SBML MML
esof00520 Saccharum officinarum (sugarcane) (EST) SBML MML
espp00520 (Undocumented) SBML MML
espu00520 Strongylocentrotus purpuratus (purple sea urchin) (EST) SBML MML
estu00520 Solanum tuberosum (potato) (EST) SBML MML
eta00520 Erwinia tasmaniensis SBML MML
etae00520 Triticum aestivum (wheat) (EST) SBML MML
evvi00520 Vitis vinifera (wine grape) (EST) SBML MML
ezel00520 (Undocumented) SBML MML
ezma00520 Zea mays (maize) (EST) SBML MML
fal00520 Frankia alni SBML MML
fgr00520 Fusarium graminearum SBML MML
fjo00520 Flavobacterium johnsoniae SBML MML
fma00520 Finegoldia magna SBML MML
fno00520 Fervidobacterium nodosum SBML MML
fnu00520 Fusobacterium nucleatum SBML MML
fph00520 Francisella philomiragia SBML MML
fps00520 Flavobacterium psychrophilum SBML MML
fra00520 Frankia sp. CcI3 SBML MML
fre00520 Frankia sp. EAN1pec SBML MML
fta00520 Francisella tularensis subsp. holarctica FTNF002-00 SBML MML
ftf00520 Francisella tularensis subsp. tularensis FSC 198 SBML MML
fth00520 Francisella tularensis subsp. holarctica OSU18 SBML MML
ftl00520 Francisella tularensis subsp. holarctica LVS SBML MML
ftm00520 Francisella tularensis subsp. mediasiatica FSC147 SBML MML
ftn00520 Francisella tularensis subsp. novicida U112 SBML MML
ftu00520 Francisella tularensis subsp. tularensis SCHU S4 SBML MML
ftw00520 Francisella tularensis subsp. tularensis WY96-3418 SBML MML
gbe00520 Granulobacter bethesdensis SBML MML
gdi00520 Gluconacetobacter diazotrophicus PAl 5 (Brazil) SBML MML
gfo00520 Gramella forsetii SBML MML
gga00520 Gallus gallus (chicken) SBML MML
gka00520 Geobacillus kaustophilus SBML MML
gla00520 Giardia lamblia SBML MML
glo00520 Geobacter lovleyi SBML MML
gme00520 Geobacter metallireducens SBML MML
gox00520 Gluconobacter oxydans SBML MML
gsu00520 Geobacter sulfurreducens SBML MML
gtn00520 Geobacillus thermodenitrificans SBML MML
gur00520 Geobacter uraniumreducens SBML MML
gvi00520 Gloeobacter violaceus SBML MML
hac00520 Helicobacter acinonychis SBML MML
hal00520 Halobacterium sp. NRC-1 SBML MML
har00520 Herminiimonas arsenicoxydans SBML MML
hau00520 Herpetosiphon aurantiacus SBML MML
hch00520 Hahella chejuensis SBML MML
hdu00520 Haemophilus ducreyi SBML MML
hha00520 Halorhodospira halophila SBML MML
hhe00520 Helicobacter hepaticus SBML MML
hin00520 Haemophilus influenzae Rd KW20 (serotype d) SBML MML
hip00520 Haemophilus influenzae PittEE SBML MML
hiq00520 Haemophilus influenzae PittGG SBML MML
hit00520 Haemophilus influenzae 86-028NP (nontypeable) SBML MML
hma00520 Haloarcula marismortui SBML MML
hmo00520 Heliobacterium modesticaldum SBML MML
hne00520 Hyphomonas neptunium SBML MML
hpa00520 Helicobacter pylori HPAG1 SBML MML
hpy00520 Helicobacter pylori 26695 SBML MML
hsa00520 Homo sapiens (human) SBML MML
hsl00520 Halobacterium salinarum R1 SBML MML
hsm00520 Haemophilus somnus 2336 SBML MML
hso00520 Haemophilus somnus 129PT SBML MML
hwa00520 Haloquadratum walsbyi SBML MML
iho00520 Ignicoccus hospitalis SBML MML
ilo00520 Idiomarina loihiensis SBML MML
jan00520 Jannaschia sp. CCS1 SBML MML
kcr00520 Candidatus Korarchaeum cryptofilum SBML MML
kla00520 Kluyveromyces lactis SBML MML
kpn00520 Klebsiella pneumoniae SBML MML
kra00520 Kineococcus radiotolerans SBML MML
krh00520 Kocuria rhizophila SBML MML
lac00520 Lactobacillus acidophilus SBML MML
lbc00520 Laccaria bicolor SBML MML
lbf00520 Leptospira biflexa serovar Patoc Patoc 1 (Ames) SBML MML
lbi00520 Leptospira biflexa serovar Patoc Patoc 1 (Paris) SBML MML
lbj00520 Leptospira borgpetersenii JB197 SBML MML
lbl00520 Leptospira borgpetersenii L550 SBML MML
lbr00520 Lactobacillus brevis SBML MML
lbu00520 Lactobacillus delbrueckii ATCC BAA-365 SBML MML
lca00520 Lactobacillus casei ATCC 334 SBML MML
lch00520 Leptothrix cholodnii SBML MML
lci00520 Leuconostoc citreum SBML MML
ldb00520 Lactobacillus delbrueckii ATCC 11842 SBML MML
lfe00520 Lactobacillus fermentum SBML MML
lga00520 Lactobacillus gasseri SBML MML
lhe00520 Lactobacillus helveticus SBML MML
lic00520 Leptospira interrogans serovar Copenhageni SBML MML
lil00520 Leptospira interrogans serovar lai SBML MML
lin00520 Listeria innocua SBML MML
lip00520 Lawsonia intracellularis SBML MML
ljo00520 Lactobacillus johnsonii SBML MML
lla00520 Lactococcus lactis subsp. lactis IL1403 SBML MML
llc00520 Lactococcus lactis subsp. cremoris SK11 SBML MML
llm00520 Lactococcus lactis subsp. cremoris MG1363 SBML MML
lma00520 Leishmania major SBML MML
lme00520 Leuconostoc mesenteroides SBML MML
lmf00520 Listeria monocytogenes F2365 SBML MML
lmo00520 Listeria monocytogenes EGD-e SBML MML
lpc00520 Legionella pneumophila Corby SBML MML
lpf00520 Legionella pneumophila Lens SBML MML
lpl00520 Lactobacillus plantarum WCFS1 SBML MML
lpn00520 Legionella pneumophila Philadelphia 1 SBML MML
lpp00520 Legionella pneumophila Paris SBML MML
lre00520 Lactobacillus reuteri DSM 20016 SBML MML
lsa00520 Lactobacillus sakei SBML MML
lsl00520 Lactobacillus salivarius SBML MML
lsp00520 Lysinibacillus sphaericus SBML MML
lwe00520 Listeria welshimeri SLCC5334 SBML MML
lxx00520 Leifsonia xyli xyli CTCB07 SBML MML
mab00520 Mycobacterium abscessus ATCC 19977T SBML MML
mac00520 Methanosarcina acetivorans SBML MML
mae00520 Methanococcus aeolicus SBML MML
mag00520 Magnetospirillum magneticum SBML MML
maq00520 Marinobacter aquaeolei SBML MML
mar00520 Microcystis aeruginosa SBML MML
mav00520 Mycobacterium avium 104 SBML MML
mba00520 Methanosarcina barkeri SBML MML
mbb00520 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbn00520 Candidatus Methanoregula boonei SBML MML
mbo00520 Mycobacterium bovis AF2122/97 SBML MML
mbr00520 Monosiga brevicollis SBML MML
mbu00520 Methanococcoides burtonii SBML MML
mca00520 Methylococcus capsulatus SBML MML
mcc00520 Macaca mulatta (rhesus monkey) SBML MML
mdo00520 Monodelphis domestica (opossum) SBML MML
mem00520 Methanoculleus marisnigri SBML MML
mes00520 Mesorhizobium sp. BNC1 SBML MML
met00520 Methylobacterium sp. 4-46 SBML MML
mex00520 Methylobacterium extorquens SBML MML
mfa00520 Methylobacillus flagellatus SBML MML
mge00520 Mycoplasma genitalium SBML MML
mgi00520 Mycobacterium gilvum SBML MML
mgl00520 Malassezia globosa SBML MML
mgm00520 Magnetococcus sp. MC-1 SBML MML
mgr00520 Magnaporthe grisea SBML MML
mhu00520 Methanospirillum hungatei SBML MML
mja00520 Methanococcus jannaschii SBML MML
mjl00520 Mycobacterium sp. JLS SBML MML
mka00520 Methanopyrus kandleri SBML MML
mkm00520 Mycobacterium sp. KMS SBML MML
mla00520 Methanocorpusculum labreanum SBML MML
mle00520 Mycobacterium leprae TN SBML MML
mlo00520 Mesorhizobium loti SBML MML
mma00520 Methanosarcina mazei SBML MML
mmc00520 Mycobacterium sp. MCS SBML MML
mmi00520 Mycobacterium marinum M SBML MML
mmo00520 Mycoplasma mobile SBML MML
mmp00520 Methanococcus maripaludis S2 SBML MML
mmq00520 Methanococcus maripaludis C5 SBML MML
mmr00520 Maricaulis maris SBML MML
mms00520 Minibacterium massiliensis SBML MML
mmu00520 Mus musculus (mouse) SBML MML
mmw00520 Marinomonas sp. MWYL1 SBML MML
mmx00520 Methanococcus maripaludis C6 SBML MML
mmy00520 Mycoplasma mycoides SBML MML
mmz00520 Methanococcus maripaludis C7 SBML MML
mpa00520 Mycobacterium avium paratuberculosis SBML MML
mpt00520 Methylibium petroleiphilum SBML MML
mra00520 Mycobacterium tuberculosis H37Ra SBML MML
mrd00520 Methylobacterium radiotolerans SBML MML
mse00520 Metallosphaera sedula SBML MML
msi00520 Methanobrevibacter smithii ATCC 35061 SBML MML
msm00520 Mycobacterium smegmatis SBML MML
mst00520 Methanosphaera stadtmanae SBML MML
msu00520 Mannheimia succiniciproducens SBML MML
mta00520 Moorella thermoacetica SBML MML
mtc00520 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00520 Mycobacterium tuberculosis F11 SBML MML
mth00520 Methanobacterium thermoautotrophicum SBML MML
mtp00520 Methanosaeta thermophila SBML MML
mtu00520 Mycobacterium tuberculosis H37Rv SBML MML
mul00520 Mycobacterium ulcerans SBML MML
mva00520 Mycobacterium vanbaalenii SBML MML
mvn00520 Methanococcus vannielii SBML MML
mxa00520 Myxococcus xanthus SBML MML
nar00520 Novosphingobium aromaticivorans SBML MML
nca00520 Nocardioides sp. JS614 SBML MML
ncr00520 Neurospora crassa SBML MML
net00520 Nitrosomonas eutropha SBML MML
neu00520 Nitrosomonas europaea SBML MML
nfa00520 Nocardia farcinica SBML MML
ngo00520 Neisseria gonorrhoeae SBML MML
nha00520 Nitrobacter hamburgensis SBML MML
nis00520 Nitratiruptor sp. SB155-2 SBML MML
nma00520 Neisseria meningitidis Z2491 (serogroup A) SBML MML
nmc00520 Neisseria meningitidis FAM18 (serogroup C) SBML MML
nme00520 Neisseria meningitidis MC58 (serogroup B) SBML MML
nmn00520 Neisseria meningitidis 053442 (serogroup C) SBML MML
nmr00520 Nitrosopumilus maritimus SBML MML
nmu00520 Nitrosospira multiformis SBML MML
noc00520 Nitrosococcus oceani SBML MML
nph00520 Natronomonas pharaonis SBML MML
npu00520 Nostoc punctiforme SBML MML
nve00520 Nematostella vectensis (sea anemone) SBML MML
nwi00520 Nitrobacter winogradskyi SBML MML
oaa00520 Ornithorhynchus anatinus (platypus) SBML MML
oan00520 Ochrobactrum anthropi SBML MML
oih00520 Oceanobacillus iheyensis SBML MML
olu00520 Ostreococcus lucimarinus SBML MML
ooe00520 Oenococcus oeni SBML MML
osa00520 Oryza sativa japonica (Japanese rice) SBML MML
ote00520 Opitutus terrae SBML MML
pab00520 Pyrococcus abyssi SBML MML
pac00520 Propionibacterium acnes SBML MML
pae00520 Pseudomonas aeruginosa PAO1 SBML MML
pai00520 Pyrobaculum aerophilum SBML MML
pan00520 Podospora anserina SBML MML
pap00520 Pseudomonas aeruginosa PA7 SBML MML
par00520 Psychrobacter arcticum SBML MML
pas00520 Pyrobaculum arsenaticum SBML MML
pat00520 Pseudoalteromonas atlantica SBML MML
pau00520 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pca00520 Pelobacter carbinolicus SBML MML
pcl00520 Pyrobaculum calidifontis SBML MML
pcr00520 Psychrobacter cryohalolentis SBML MML
pcu00520 Candidatus Protochlamydia amoebophila SBML MML
pde00520 Paracoccus denitrificans SBML MML
pdi00520 Parabacteroides distasonis SBML MML
pen00520 Pseudomonas entomophila SBML MML
pfl00520 Pseudomonas fluorescens Pf-5 SBML MML
pfo00520 Pseudomonas fluorescens Pf0-1 SBML MML
pfu00520 Pyrococcus furiosus SBML MML
pgi00520 Porphyromonas gingivalis W83 SBML MML
pgn00520 Porphyromonas gingivalis ATCC 33277 SBML MML
pha00520 Pseudoalteromonas haloplanktis SBML MML
pho00520 Pyrococcus horikoshii SBML MML
pic00520 Pichia stipitis SBML MML
pin00520 Psychromonas ingrahamii SBML MML
pis00520 Pyrobaculum islandicum SBML MML
pla00520 Parvibaculum lavamentivorans SBML MML
plt00520 Pelodictyon luteolum SBML MML
plu00520 Photorhabdus luminescens SBML MML
pma00520 Prochlorococcus marinus SS120 SBML MML
pmb00520 Prochlorococcus marinus AS9601 SBML MML
pmc00520 Prochlorococcus marinus MIT 9515 SBML MML
pme00520 Prochlorococcus marinus NATL1A SBML MML
pmf00520 Prochlorococcus marinus MIT 9303 SBML MML
pmg00520 Prochlorococcus marinus MIT 9301 SBML MML
pmh00520 Prochlorococcus marinus MIT 9215 SBML MML
pmi00520 Prochlorococcus marinus MIT9312 SBML MML
pmj00520 Prochlorococcus marinus MIT 9211 SBML MML
pmm00520 Prochlorococcus marinus MED4 SBML MML
pmn00520 Prochlorococcus marinus NATL2A SBML MML
pmo00520 Petrotoga mobilis SBML MML
pmt00520 Prochlorococcus marinus MIT9313 SBML MML
pmu00520 Pasteurella multocida SBML MML
pmy00520 Pseudomonas mendocina SBML MML
pna00520 Polaromonas naphthalenivorans SBML MML
pne00520 Polynucleobacter necessarius SBML MML
pnu00520 Polynucleobacter sp. QLW-P1DMWA-1 SBML MML
pol00520 Polaromonas sp. JS666 SBML MML
ppd00520 Pelobacter propionicus SBML MML
ppe00520 Pediococcus pentosaceus SBML MML
ppf00520 Pseudomonas putida F1 SBML MML
ppg00520 Pseudomonas putida GB-1 SBML MML
ppp00520 Physcomitrella patens subsp. patens SBML MML
ppr00520 Photobacterium profundum SBML MML
ppu00520 Pseudomonas putida KT2440 SBML MML
ppw00520 Pseudomonas putida W619 SBML MML
prw00520 Psychrobacter sp. PRwf-1 SBML MML
psa00520 Pseudomonas stutzeri SBML MML
psb00520 Pseudomonas syringae pv. syringae B728a SBML MML
psp00520 Pseudomonas syringae pv. phaseolicola 1448A SBML MML
pst00520 Pseudomonas syringae pv. tomato DC3000 SBML MML
pth00520 Pelotomaculum thermopropionicum SBML MML
pto00520 Picrophilus torridus SBML MML
ptr00520 Pan troglodytes (chimpanzee) SBML MML
pub00520 Candidatus Pelagibacter ubique SBML MML
pvi00520 Prosthecochloris vibrioformis SBML MML
rak00520 Rickettsia akari SBML MML
rba00520 Rhodopirellula baltica SBML MML
rbe00520 Rickettsia bellii RML369-C SBML MML
rbo00520 Rickettsia bellii OSU 85-389 SBML MML
rca00520 Roseiflexus castenholzii DSM13941 SBML MML
rci00520 Uncultured methanogenic archaeon RC-I SBML MML
rcm00520 Rickettsia canadensis SBML MML
rco00520 Rickettsia conorii SBML MML
rde00520 Roseobacter denitrificans SBML MML
rec00520 Rhizobium etli CIAT 652 SBML MML
reh00520 Ralstonia eutropha H16 SBML MML
ret00520 Rhizobium etli CFN 42 SBML MML
reu00520 Ralstonia eutropha JMP134 SBML MML
rfe00520 Rickettsia felis SBML MML
rfr00520 Rhodoferax ferrireducens SBML MML
rha00520 Rhodococcus sp. RHA1 SBML MML
rle00520 Rhizobium leguminosarum SBML MML
rme00520 Ralstonia metallidurans SBML MML
rms00520 Rickettsia massiliae SBML MML
rno00520 Rattus norvegicus (rat) SBML MML
rpa00520 Rhodopseudomonas palustris CGA009 SBML MML
rpb00520 Rhodopseudomonas palustris HaA2 SBML MML
rpc00520 Rhodopseudomonas palustris BisB18 SBML MML
rpd00520 Rhodopseudomonas palustris BisB5 SBML MML
rpe00520 Rhodopseudomonas palustris BisA53 SBML MML
rpt00520 Rhodopseudomonas palustris TIE-1 SBML MML
rri00520 Rickettsia rickettsii Sheila Smith SBML MML
rrj00520 Rickettsia rickettsii Iowa SBML MML
rrs00520 Roseiflexus sp. RS-1 SBML MML
rru00520 Rhodospirillum rubrum SBML MML
rsa00520 Renibacterium salmoninarum SBML MML
rsh00520 Rhodobacter sphaeroides ATCC 17029 SBML MML
rso00520 Ralstonia solanacearum SBML MML
rsp00520 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00520 Rhodobacter sphaeroides ATCC 17025 SBML MML
rty00520 Rickettsia typhi SBML MML
rxy00520 Rubrobacter xylanophilus SBML MML
saa00520 Staphylococcus aureus USA300 SBML MML
sab00520 Staphylococcus aureus RF122 SBML MML
sac00520 Staphylococcus aureus COL SBML MML
sae00520 Staphylococcus aureus Newman SBML MML
sag00520 Streptococcus agalactiae 2603 (serotype V) SBML MML
sah00520 Staphylococcus aureus JH1 SBML MML
sai00520 Sulfolobus acidocaldarius SBML MML
saj00520 Staphylococcus aureus JH9 SBML MML
sak00520 Streptococcus agalactiae A909 (serotype Ia) SBML MML
sal00520 Sphingopyxis alaskensis SBML MML
sam00520 Staphylococcus aureus MW2 SBML MML
san00520 Streptococcus agalactiae NEM316 (serotype III) SBML MML
sao00520 Staphylococcus aureus NCTC8325 SBML MML
saq00520 Salinispora arenicola SBML MML
sar00520 Staphylococcus aureus MRSA252 SBML MML
sas00520 Staphylococcus aureus MSSA476 SBML MML
sat00520 Syntrophus aciditrophicus SBML MML
sau00520 Staphylococcus aureus N315 SBML MML
sav00520 Staphylococcus aureus Mu50 SBML MML
saw00520 Staphylococcus aureus Mu3 SBML MML
sax00520 Staphylococcus aureus USA300 TCH1516 SBML MML
saz00520 Shewanella amazonensis SBML MML
sbc00520 Shigella boydii CDC 3083-94 SBML MML
sbl00520 Shewanella baltica OS155 SBML MML
sbm00520 Shewanella baltica OS185 SBML MML
sbn00520 Shewanella baltica OS195 SBML MML
sbo00520 Shigella boydii Sb227 SBML MML
sce00520 Saccharomyces cerevisiae SBML MML
scl00520 Sorangium cellulosum SBML MML
sco00520 Streptomyces coelicolor SBML MML
sde00520 Saccharophagus degradans SBML MML
sdn00520 Shewanella denitrificans SBML MML
sdy00520 Shigella dysenteriae SBML MML
sec00520 Salmonella enterica subsp. enterica serovar Choleraesuis SBML MML
sen00520 Saccharopolyspora erythraea SBML MML
ses00520 Salmonella enterica subsp. arizonae SBML MML
sfl00520 Shigella flexneri 301 (serotype 2a) SBML MML
sfr00520 Shewanella frigidimarina SBML MML
sfu00520 Syntrophobacter fumaroxidans SBML MML
sfv00520 Shigella flexneri 8401 (serotype 5b) SBML MML
sfx00520 Shigella flexneri 2457T (serotype 2a) SBML MML
sgl00520 Sodalis glossinidius SBML MML
sgo00520 Streptococcus gordonii SBML MML
sgr00520 Streptomyces griseus SBML MML
she00520 Shewanella sp. MR-4 SBML MML
shl00520 Shewanella halifaxensis SBML MML
shm00520 Shewanella sp. MR-7 SBML MML
shn00520 Shewanella sp. ANA-3 SBML MML
shw00520 Shewanella sp. W3-18-1 SBML MML
sit00520 Silicibacter sp. TM1040 SBML MML
slo00520 Shewanella loihica SBML MML
sma00520 Streptomyces avermitilis SBML MML
smd00520 Sinorhizobium medicae SBML MML
sme00520 Sinorhizobium meliloti SBML MML
sml00520 Stenotrophomonas maltophilia SBML MML
smr00520 Staphylothermus marinus SBML MML
smu00520 Streptococcus mutans SBML MML
son00520 Shewanella oneidensis SBML MML
spa00520 Streptococcus pyogenes MGAS10394 (serotype M6) SBML MML
spb00520 Streptococcus pyogenes MGAS6180 (serotype M28) SBML MML
spc00520 Shewanella putrefaciens SBML MML
spd00520 Streptococcus pneumoniae D39 SBML MML
spe00520 Serratia proteamaculans SBML MML
spf00520 Streptococcus pyogenes Manfredo (serotype M5) SBML MML
spg00520 Streptococcus pyogenes MGAS315 (serotype M3) SBML MML
sph00520 Streptococcus pyogenes MGAS10270 (serotype M2) SBML MML
spi00520 Streptococcus pyogenes MGAS10750 (serotype M4) SBML MML
spj00520 Streptococcus pyogenes MGAS2096 (serotype M12) SBML MML
spk00520 Streptococcus pyogenes MGAS9429 (serotype M12) SBML MML
spl00520 Shewanella pealeana SBML MML
spm00520 Streptococcus pyogenes MGAS8232 (serotype M18) SBML MML
spn00520 Streptococcus pneumoniae TIGR4 SBML MML
spo00520 Schizosaccharomyces pombe SBML MML
spq00520 Salmonella enterica subsp. enterica serovar Paratyphi B SBML MML
spr00520 Streptococcus pneumoniae R6 SBML MML
sps00520 Streptococcus pyogenes SSI-1 (serotype M3) SBML MML
spt00520 Salmonella enterica subsp. enterica serovar Paratyphi A SBML MML
spu00520 Strongylocentrotus purpuratus (purple sea urchin) SBML MML
spv00520 Streptococcus pneumoniae Hungary19A 6 SBML MML
spw00520 Streptococcus pneumoniae CGSP14 (serotype 14) SBML MML
spy00520 Streptococcus pyogenes SF370 (serotype M1) SBML MML
spz00520 Streptococcus pyogenes MGAS5005 (serotype M1) SBML MML
sru00520 Salinibacter ruber SBML MML
ssa00520 Streptococcus sanguinis SBML MML
sse00520 Shewanella sediminis SBML MML
ssn00520 Shigella sonnei SBML MML
sso00520 Sulfolobus solfataricus SBML MML
ssp00520 Staphylococcus saprophyticus SBML MML
ssu00520 Streptococcus suis 05ZYH33 SBML MML
ssv00520 Streptococcus suis 98HAH33 SBML MML
stc00520 Streptococcus thermophilus CNRZ1066 SBML MML
ste00520 Streptococcus thermophilus LMD-9 SBML MML
sth00520 Symbiobacterium thermophilum SBML MML
stl00520 Streptococcus thermophilus LMG18311 SBML MML
stm00520 Salmonella typhimurium LT2 SBML MML
sto00520 Sulfolobus tokodaii SBML MML
stp00520 Salinispora tropica SBML MML
stt00520 Salmonella enterica subsp. enterica serovar Typhi Ty2 SBML MML
sty00520 Salmonella enterica subsp. enterica serovar Typhi CT18 SBML MML
sul00520 Sulfurihydrogenibium sp. YO3AOP1 SBML MML
sun00520 Sulfurovum sp. NBC37-1 SBML MML
sus00520 Solibacter usitatus SBML MML
swd00520 Shewanella woodyi ATCC 51908 SBML MML
swi00520 Sphingomonas wittichii SBML MML
swo00520 Syntrophomonas wolfei SBML MML
syc00520 Synechococcus elongatus PCC6301 SBML MML
syd00520 Synechococcus sp. CC9605 SBML MML
sye00520 Synechococcus sp. CC9902 SBML MML
syf00520 Synechococcus elongatus PCC7942 SBML MML
syg00520 Synechococcus sp. CC9311 SBML MML
syn00520 Synechocystis sp. PCC6803 SBML MML
syp00520 Synechococcus sp. PCC7002 SBML MML
syr00520 Synechococcus sp. RCC307 SBML MML
syw00520 Synechococcus sp. WH8102 SBML MML
syx00520 Synechococcus sp. WH7803 SBML MML
tac00520 Thermoplasma acidophilum SBML MML
tbd00520 Thiobacillus denitrificans SBML MML
tbr00520 Trypanosoma brucei SBML MML
tca00520 Tribolium castaneum (red flour beetle) SBML MML
tcr00520 Trypanosoma cruzi SBML MML
tcx00520 Thiomicrospira crunogena SBML MML
tde00520 Treponema denticola SBML MML
tdn00520 Thiomicrospira denitrificans SBML MML
tel00520 Thermosynechococcus elongatus SBML MML
ter00520 Trichodesmium erythraeum SBML MML
tet00520 Tetrahymena thermophila SBML MML
tex00520 Thermoanaerobacter sp. X514 SBML MML
tfu00520 Thermobifida fusca SBML MML
tko00520 Thermococcus kodakaraensis SBML MML
tle00520 Thermotoga lettingae SBML MML
tma00520 Thermotoga maritima SBML MML
tme00520 Thermosipho melanesiensis SBML MML
tne00520 Thermoproteus neutrophilus SBML MML
tpd00520 Thermoanaerobacter pseudethanolicus SBML MML
tpe00520 Thermofilum pendens SBML MML
tpt00520 Thermotoga petrophila SBML MML
trq00520 Thermotoga sp. RQ2 SBML MML
tte00520 Thermoanaerobacter tengcongensis SBML MML
tth00520 Thermus thermophilus HB27 SBML MML
ttj00520 Thermus thermophilus HB8 SBML MML
tva00520 Trichomonas vaginalis SBML MML
tvo00520 Thermoplasma volcanium SBML MML
twh00520 Tropheryma whipplei Twist SBML MML
tws00520 Tropheryma whipplei TW08/27 SBML MML
uma00520 Ustilago maydis SBML MML
vch00520 Vibrio cholerae O1 SBML MML
vco00520 Vibrio cholerae O395 SBML MML
vei00520 Verminephrobacter eiseniae SBML MML
vfi00520 Vibrio fischeri SBML MML
vha00520 Vibrio harveyi SBML MML
vpa00520 Vibrio parahaemolyticus SBML MML
vpo00520 Vanderwaltozyma polyspora SBML MML
vvu00520 Vibrio vulnificus CMCP6 SBML MML
vvy00520 Vibrio vulnificus YJ016 SBML MML
wbr00520 Wigglesworthia glossinidia SBML MML
wsu00520 Wolinella succinogenes SBML MML
xac00520 Xanthomonas axonopodis SBML MML
xau00520 Xanthobacter autotrophicus SBML MML
xcb00520 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00520 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00520 Xanthomonas campestris pv. vesicatoria SBML MML
xfa00520 Xylella fastidiosa 9a5c SBML MML
xfm00520 Xylella fastidiosa M12 SBML MML
xfn00520 Xylella fastidiosa M23 SBML MML
xft00520 Xylella fastidiosa Temecula1 SBML MML
xla00520 Xenopus laevis (African clawed frog) SBML MML
xom00520 Xanthomonas oryzae MAFF311018 SBML MML
xoo00520 Xanthomonas oryzae KACC10331 SBML MML
xtr00520 Xenopus tropicalis (western clawed frog) SBML MML
yen00520 Yersinia enterocolitica SBML MML
yli00520 Yarrowia lipolytica SBML MML
ypa00520 Yersinia pestis Antiqua SBML MML
ype00520 Yersinia pestis CO92 SBML MML
ypg00520 Yersinia pestis Angola SBML MML
ypi00520 Yersinia pseudotuberculosis IP31758 SBML MML
ypk00520 Yersinia pestis KIM SBML MML
ypm00520 Yersinia pestis Mediaevails SBML MML
ypn00520 Yersinia pestis Nepal516 SBML MML
ypp00520 Yersinia pestis Pestoides SBML MML
yps00520 Yersinia pseudotuberculosis IP32953 SBML MML
ypy00520 Yersinia pseudotuberculosis YPIII SBML MML
zmo00520 Zymomonas mobilis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.