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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00621: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
abc00621 Acinetobacter baumannii ACICU SBML MML
aeh00621 Alkalilimnicola ehrlichei SBML MML
amr00621 Acaryochloris marina SBML MML
azo00621 Azoarcus sp. BH72 SBML MML
bav00621 Bordetella avium SBML MML
bca00621 Bacillus cereus ATCC 10987 SBML MML
bme00621 Brucella melitensis 16M SBML MML
bmf00621 Brucella melitensis biovar Abortus SBML MML
bmu00621 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bph00621 Burkholderia phymatum SBML MML
bpt00621 Bordetella petrii SBML MML
btl00621 Bacillus thuringiensis Al Hakam SBML MML
bur00621 Burkholderia sp. 383 SBML MML
bxe00621 Burkholderia xenovorans SBML MML
cak00621 Caulobacter sp. K31 SBML MML
cau00621 Chloroflexus aurantiacus SBML MML
ccr00621 Caulobacter crescentus CB15 SBML MML
cti00621 Cupriavidus taiwanensis SBML MML
cvi00621 Chromobacterium violaceum SBML MML
dar00621 Dechloromonas aromatica SBML MML
dfru00621 Fugu rubripes (Japanese puffer fish) SBML MML
dpop00621 (Undocumented) SBML MML
ece00621 Escherichia coli O157 EDL933 (EHEC) SBML MML
ecj00621 Escherichia coli K-12 W3110 SBML MML
ecl00621 Escherichia coli ATCC 8739 SBML MML
ecm00621 Escherichia coli SECEC SBML MML
eco00621 Escherichia coli K-12 MG1655 SBML MML
ecs00621 Escherichia coli O157 Sakai (EHEC) SBML MML
ecw00621 Escherichia coli E24377A SBML MML
ecx00621 Escherichia coli HS SBML MML
ehan00621 Helianthus annuus (sunflower) (EST) SBML MML
emtr00621 Medicago truncatula (barrel medic) (EST) SBML MML
eosa00621 Oryza sativa (rice) (EST) SBML MML
eosj00621 Oryza sativa japonica (Japanese rice) (EST) SBML MML
eppp00621 Physcomitrella patens subsp. patens (EST) SBML MML
fal00621 Frankia alni SBML MML
fre00621 Frankia sp. EAN1pec SBML MML
kpn00621 Klebsiella pneumoniae SBML MML
mab00621 Mycobacterium abscessus ATCC 19977T SBML MML
mav00621 Mycobacterium avium 104 SBML MML
mbb00621 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbo00621 Mycobacterium bovis AF2122/97 SBML MML
mgi00621 Mycobacterium gilvum SBML MML
mmi00621 Mycobacterium marinum M SBML MML
mpa00621 Mycobacterium avium paratuberculosis SBML MML
mpt00621 Methylibium petroleiphilum SBML MML
mra00621 Mycobacterium tuberculosis H37Ra SBML MML
msm00621 Mycobacterium smegmatis SBML MML
mtc00621 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00621 Mycobacterium tuberculosis F11 SBML MML
mtu00621 Mycobacterium tuberculosis H37Rv SBML MML
mul00621 Mycobacterium ulcerans SBML MML
nfa00621 Nocardia farcinica SBML MML
pha00621 Pseudoalteromonas haloplanktis SBML MML
pla00621 Parvibaculum lavamentivorans SBML MML
plu00621 Photorhabdus luminescens SBML MML
pna00621 Polaromonas naphthalenivorans SBML MML
ppf00621 Pseudomonas putida F1 SBML MML
ppg00621 Pseudomonas putida GB-1 SBML MML
ppw00621 Pseudomonas putida W619 SBML MML
reh00621 Ralstonia eutropha H16 SBML MML
ret00621 Rhizobium etli CFN 42 SBML MML
reu00621 Ralstonia eutropha JMP134 SBML MML
rha00621 Rhodococcus sp. RHA1 SBML MML
rle00621 Rhizobium leguminosarum SBML MML
rso00621 Ralstonia solanacearum SBML MML
saa00621 Staphylococcus aureus USA300 SBML MML
saq00621 Salinispora arenicola SBML MML
sco00621 Streptomyces coelicolor SBML MML
sgr00621 Streptomyces griseus SBML MML
shl00621 Shewanella halifaxensis SBML MML
spe00621 Serratia proteamaculans SBML MML
spl00621 Shewanella pealeana SBML MML
ssn00621 Shigella sonnei SBML MML
stp00621 Salinispora tropica SBML MML
swd00621 Shewanella woodyi ATCC 51908 SBML MML
swi00621 Sphingomonas wittichii SBML MML
ttj00621 Thermus thermophilus HB8 SBML MML
xau00621 Xanthobacter autotrophicus SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.