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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00628: Fluorene degradation

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aau00628 Arthrobacter aurescens SBML MML
aav00628 Acidovorax avenae SBML MML
abc00628 Acinetobacter baumannii ACICU SBML MML
abu00628 Arcobacter butzleri SBML MML
aby00628 Acinetobacter baumannii AYE SBML MML
aci00628 Acinetobacter sp. ADP1 SBML MML
aeh00628 Alkalilimnicola ehrlichei SBML MML
afm00628 Aspergillus fumigatus SBML MML
ajs00628 Acidovorax sp. JS42 SBML MML
amr00628 Acaryochloris marina SBML MML
ana00628 Anabaena sp. PCC7120 SBML MML
ang00628 Aspergillus niger SBML MML
asa00628 Aeromonas salmonicida SBML MML
atc00628 Agrobacterium tumefaciens C58 (Cereon) SBML MML
ath00628 Arabidopsis thaliana (thale cress) SBML MML
atu00628 Agrobacterium tumefaciens C58 SBML MML
azc00628 Azorhizobium caulinodans SBML MML
azo00628 Azoarcus sp. BH72 SBML MML
bac00628 Burkholderia ambifaria MC40-6 SBML MML
bam00628 Burkholderia cepacia SBML MML
bav00628 Bordetella avium SBML MML
bay00628 Bacillus amyloliquefaciens SBML MML
bbk00628 Bartonella bacilliformis SBML MML
bbr00628 Bordetella bronchiseptica SBML MML
bbt00628 Bradyrhizobium sp. BTAi1 SBML MML
bca00628 Bacillus cereus ATCC 10987 SBML MML
bch00628 Burkholderia cenocepacia HI2424 SBML MML
bcl00628 Bacillus clausii SBML MML
bcm00628 Burkholderia cenocepacia MC0-3 SBML MML
bcn00628 Burkholderia cenocepacia AU1054 SBML MML
bcs00628 Brucella canis SBML MML
bha00628 Bacillus halodurans SBML MML
bhe00628 Bartonella henselae SBML MML
bid00628 Beijerinckia indica SBML MML
bja00628 Bradyrhizobium japonicum SBML MML
bld00628 Bacillus licheniformis DSM13 SBML MML
bli00628 Bacillus licheniformis ATCC 14580 SBML MML
bma00628 Burkholderia mallei ATCC 23344 SBML MML
bmb00628 Brucella abortus 9-941 SBML MML
bmc00628 Brucella abortus S19 SBML MML
bme00628 Brucella melitensis 16M SBML MML
bmf00628 Brucella melitensis biovar Abortus SBML MML
bml00628 Burkholderia mallei NCTC 10229 SBML MML
bmn00628 Burkholderia mallei NCTC 10247 SBML MML
bms00628 Brucella suis 1330 SBML MML
bmt00628 Brucella suis ATCC 23445 SBML MML
bmu00628 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00628 Burkholderia mallei SAVP1 SBML MML
bov00628 Brucella ovis SBML MML
bpa00628 Bordetella parapertussis SBML MML
bpd00628 Burkholderia pseudomallei 668 SBML MML
bpe00628 Bordetella pertussis SBML MML
bph00628 Burkholderia phymatum SBML MML
bpl00628 Burkholderia pseudomallei 1106a SBML MML
bpm00628 Burkholderia pseudomallei 1710b SBML MML
bps00628 Burkholderia pseudomallei K96243 SBML MML
bpt00628 Bordetella petrii SBML MML
bpu00628 Bacillus pumilus SBML MML
bqu00628 Bartonella quintana SBML MML
bra00628 Bradyrhizobium sp. ORS278 SBML MML
bsu00628 Bacillus subtilis SBML MML
bte00628 Burkholderia thailandensis SBML MML
btl00628 Bacillus thuringiensis Al Hakam SBML MML
btr00628 Bartonella tribocorum SBML MML
bur00628 Burkholderia sp. 383 SBML MML
bvi00628 Burkholderia vietnamiensis SBML MML
bvu00628 Bacteroides vulgatus SBML MML
bxe00628 Burkholderia xenovorans SBML MML
cak00628 Caulobacter sp. K31 SBML MML
cau00628 Chloroflexus aurantiacus SBML MML
cco00628 Campylobacter concisus 13826 SBML MML
ccr00628 Caulobacter crescentus CB15 SBML MML
ccv00628 Campylobacter curvus SBML MML
cfa00628 Canis familiaris (dog) SBML MML
cff00628 Campylobacter fetus SBML MML
cgl00628 Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) SBML MML
cha00628 Campylobacter hominis ATCC BAA-381 SBML MML
chu00628 Cytophaga hutchinsonii SBML MML
chy00628 Carboxydothermus hydrogenoformans SBML MML
cjd00628 Campylobacter jejuni subsp. doylei 269.97 SBML MML
cje00628 Campylobacter jejuni NCTC11168 SBML MML
cjj00628 Campylobacter jejuni 81-176 SBML MML
cjr00628 Campylobacter jejuni RM1221 SBML MML
cju00628 Campylobacter jejuni 81116 SBML MML
cre00628 Chlamydomonas reinhardtii SBML MML
cvi00628 Chromobacterium violaceum SBML MML
daag00628 (Undocumented) SBML MML
dac00628 Delftia acidovorans SBML MML
dar00628 Dechloromonas aromatica SBML MML
decb00628 (Undocumented) SBML MML
dfru00628 Fugu rubripes (Japanese puffer fish) SBML MML
dge00628 Deinococcus geothermalis SBML MML
dha00628 Debaryomyces hansenii SBML MML
dola00628 Oryzias latipes (Japanese medaka) SBML MML
dpop00628 (Undocumented) SBML MML
dptm00628 (Undocumented) SBML MML
dsh00628 Dinoroseobacter shibae SBML MML
dsy00628 Desulfitobacterium hafniense Y51 SBML MML
dvl00628 Desulfovibrio vulgaris DP4 SBML MML
dvu00628 Desulfovibrio vulgaris Hildenborough SBML MML
dvvi00628 (Undocumented) SBML MML
eacp00628 (Undocumented) SBML MML
ebna00628 Brassica napus (rape) (EST) SBML MML
ebvl00628 Beta vulgaris (beet) (EST) SBML MML
eca00628 Erwinia carotovora SBML MML
ece00628 Escherichia coli O157 EDL933 (EHEC) SBML MML
ecj00628 Escherichia coli K-12 W3110 SBML MML
ecl00628 Escherichia coli ATCC 8739 SBML MML
ecm00628 Escherichia coli SECEC SBML MML
eco00628 Escherichia coli K-12 MG1655 SBML MML
ecs00628 Escherichia coli O157 Sakai (EHEC) SBML MML
ecsi00628 Citrus sinensis (Valencia orange) (EST) SBML MML
ecsv00628 Ciona savignyi (EST) SBML MML
ecw00628 Escherichia coli E24377A SBML MML
ecx00628 Escherichia coli HS SBML MML
eees00628 Euphorbia esula (leafy spurge) (EST) SBML MML
efar00628 Festuca arundinacea (tall fescue) (EST) SBML MML
egar00628 Gossypium arboreum (tree cotton) (EST) SBML MML
eghi00628 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00628 Glycine max (soybean) (EST) SBML MML
egra00628 Gossypium raimondii (EST) SBML MML
ehan00628 Helianthus annuus (sunflower) (EST) SBML MML
ehvu00628 Hordeum vulgare (barley) (EST) SBML MML
eini00628 Ipomoea nil (Japanese morning glory) (EST) SBML MML
elpe00628 Lactuca perennis (blue lettuce) (EST) SBML MML
elsi00628 Lactuca saligna (willow-leaf lettuce) (EST) SBML MML
elst00628 Lactuca sativa (lettuce) (EST) SBML MML
emtr00628 Medicago truncatula (barrel medic) (EST) SBML MML
ent00628 Enterobacter sp. 638 SBML MML
eosa00628 Oryza sativa (rice) (EST) SBML MML
eosi00628 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00628 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00628 Picea glauca (white spruce) (EST) SBML MML
epop00628 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppp00628 Physcomitrella patens subsp. patens (EST) SBML MML
epps00628 Prunus persica (peach) (EST) SBML MML
epsi00628 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00628 Pinus taeda (loblolly pine) (EST) SBML MML
eptp00628 Populus tremula (European aspen) (EST) SBML MML
esbi00628 Sorghum bicolor (sorghum) (EST) SBML MML
esly00628 Solanum lycopersicum (tomato) (EST) SBML MML
esof00628 Saccharum officinarum (sugarcane) (EST) SBML MML
estu00628 Solanum tuberosum (potato) (EST) SBML MML
eta00628 Erwinia tasmaniensis SBML MML
etae00628 Triticum aestivum (wheat) (EST) SBML MML
evvi00628 Vitis vinifera (wine grape) (EST) SBML MML
ezma00628 Zea mays (maize) (EST) SBML MML
fal00628 Frankia alni SBML MML
fgr00628 Fusarium graminearum SBML MML
fjo00628 Flavobacterium johnsoniae SBML MML
fra00628 Frankia sp. CcI3 SBML MML
fre00628 Frankia sp. EAN1pec SBML MML
glo00628 Geobacter lovleyi SBML MML
gme00628 Geobacter metallireducens SBML MML
gsu00628 Geobacter sulfurreducens SBML MML
gur00628 Geobacter uraniumreducens SBML MML
hac00628 Helicobacter acinonychis SBML MML
har00628 Herminiimonas arsenicoxydans SBML MML
hpa00628 Helicobacter pylori HPAG1 SBML MML
hpj00628 Helicobacter pylori J99 SBML MML
hpy00628 Helicobacter pylori 26695 SBML MML
hwa00628 Haloquadratum walsbyi SBML MML
kpn00628 Klebsiella pneumoniae SBML MML
lbc00628 Laccaria bicolor SBML MML
lbr00628 Lactobacillus brevis SBML MML
lch00628 Leptothrix cholodnii SBML MML
lfe00628 Lactobacillus fermentum SBML MML
llm00628 Lactococcus lactis subsp. cremoris MG1363 SBML MML
lma00628 Leishmania major SBML MML
lpl00628 Lactobacillus plantarum WCFS1 SBML MML
lre00628 Lactobacillus reuteri DSM 20016 SBML MML
lsa00628 Lactobacillus sakei SBML MML
lsp00628 Lysinibacillus sphaericus SBML MML
mab00628 Mycobacterium abscessus ATCC 19977T SBML MML
mav00628 Mycobacterium avium 104 SBML MML
mbb00628 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbo00628 Mycobacterium bovis AF2122/97 SBML MML
met00628 Methylobacterium sp. 4-46 SBML MML
mex00628 Methylobacterium extorquens SBML MML
mgi00628 Mycobacterium gilvum SBML MML
mgr00628 Magnaporthe grisea SBML MML
mjl00628 Mycobacterium sp. JLS SBML MML
mkm00628 Mycobacterium sp. KMS SBML MML
mlo00628 Mesorhizobium loti SBML MML
mmc00628 Mycobacterium sp. MCS SBML MML
mmi00628 Mycobacterium marinum M SBML MML
mmw00628 Marinomonas sp. MWYL1 SBML MML
mpa00628 Mycobacterium avium paratuberculosis SBML MML
mpt00628 Methylibium petroleiphilum SBML MML
mra00628 Mycobacterium tuberculosis H37Ra SBML MML
mrd00628 Methylobacterium radiotolerans SBML MML
msm00628 Mycobacterium smegmatis SBML MML
mta00628 Moorella thermoacetica SBML MML
mtc00628 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00628 Mycobacterium tuberculosis F11 SBML MML
mth00628 Methanobacterium thermoautotrophicum SBML MML
mtu00628 Mycobacterium tuberculosis H37Rv SBML MML
mul00628 Mycobacterium ulcerans SBML MML
mva00628 Mycobacterium vanbaalenii SBML MML
nar00628 Novosphingobium aromaticivorans SBML MML
nca00628 Nocardioides sp. JS614 SBML MML
ncr00628 Neurospora crassa SBML MML
neu00628 Nitrosomonas europaea SBML MML
nfa00628 Nocardia farcinica SBML MML
nph00628 Natronomonas pharaonis SBML MML
npu00628 Nostoc punctiforme SBML MML
oan00628 Ochrobactrum anthropi SBML MML
pan00628 Podospora anserina SBML MML
pca00628 Pelobacter carbinolicus SBML MML
pde00628 Paracoccus denitrificans SBML MML
pen00628 Pseudomonas entomophila SBML MML
pfl00628 Pseudomonas fluorescens Pf-5 SBML MML
pha00628 Pseudoalteromonas haloplanktis SBML MML
pla00628 Parvibaculum lavamentivorans SBML MML
plu00628 Photorhabdus luminescens SBML MML
pna00628 Polaromonas naphthalenivorans SBML MML
pol00628 Polaromonas sp. JS666 SBML MML
ppf00628 Pseudomonas putida F1 SBML MML
ppg00628 Pseudomonas putida GB-1 SBML MML
ppp00628 Physcomitrella patens subsp. patens SBML MML
ppu00628 Pseudomonas putida KT2440 SBML MML
ppw00628 Pseudomonas putida W619 SBML MML
psb00628 Pseudomonas syringae pv. syringae B728a SBML MML
psp00628 Pseudomonas syringae pv. phaseolicola 1448A SBML MML
pth00628 Pelotomaculum thermopropionicum SBML MML
pub00628 Candidatus Pelagibacter ubique SBML MML
rba00628 Rhodopirellula baltica SBML MML
rca00628 Roseiflexus castenholzii DSM13941 SBML MML
rde00628 Roseobacter denitrificans SBML MML
rec00628 Rhizobium etli CIAT 652 SBML MML
reh00628 Ralstonia eutropha H16 SBML MML
ret00628 Rhizobium etli CFN 42 SBML MML
reu00628 Ralstonia eutropha JMP134 SBML MML
rfr00628 Rhodoferax ferrireducens SBML MML
rha00628 Rhodococcus sp. RHA1 SBML MML
rle00628 Rhizobium leguminosarum SBML MML
rme00628 Ralstonia metallidurans SBML MML
rpa00628 Rhodopseudomonas palustris CGA009 SBML MML
rpb00628 Rhodopseudomonas palustris HaA2 SBML MML
rpc00628 Rhodopseudomonas palustris BisB18 SBML MML
rpd00628 Rhodopseudomonas palustris BisB5 SBML MML
rpe00628 Rhodopseudomonas palustris BisA53 SBML MML
rpt00628 Rhodopseudomonas palustris TIE-1 SBML MML
rrs00628 Roseiflexus sp. RS-1 SBML MML
rsa00628 Renibacterium salmoninarum SBML MML
rso00628 Ralstonia solanacearum SBML MML
rsp00628 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00628 Rhodobacter sphaeroides ATCC 17025 SBML MML
sal00628 Sphingopyxis alaskensis SBML MML
saq00628 Salinispora arenicola SBML MML
sco00628 Streptomyces coelicolor SBML MML
sdn00628 Shewanella denitrificans SBML MML
sen00628 Saccharopolyspora erythraea SBML MML
sfu00628 Syntrophobacter fumaroxidans SBML MML
sgr00628 Streptomyces griseus SBML MML
shl00628 Shewanella halifaxensis SBML MML
sil00628 Ruegeria pomeroyi SBML MML
sit00628 Silicibacter sp. TM1040 SBML MML
smd00628 Sinorhizobium medicae SBML MML
sme00628 Sinorhizobium meliloti SBML MML
sml00628 Stenotrophomonas maltophilia SBML MML
son00628 Shewanella oneidensis SBML MML
spd00628 Streptococcus pneumoniae D39 SBML MML
spe00628 Serratia proteamaculans SBML MML
spl00628 Shewanella pealeana SBML MML
spn00628 Streptococcus pneumoniae TIGR4 SBML MML
spo00628 Schizosaccharomyces pombe SBML MML
spr00628 Streptococcus pneumoniae R6 SBML MML
ssn00628 Shigella sonnei SBML MML
sth00628 Symbiobacterium thermophilum SBML MML
stp00628 Salinispora tropica SBML MML
sun00628 Sulfurovum sp. NBC37-1 SBML MML
swd00628 Shewanella woodyi ATCC 51908 SBML MML
swi00628 Sphingomonas wittichii SBML MML
ttj00628 Thermus thermophilus HB8 SBML MML
uma00628 Ustilago maydis SBML MML
vei00628 Verminephrobacter eiseniae SBML MML
vfi00628 Vibrio fischeri SBML MML
wsu00628 Wolinella succinogenes SBML MML
xac00628 Xanthomonas axonopodis SBML MML
xau00628 Xanthobacter autotrophicus SBML MML
xcb00628 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00628 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00628 Xanthomonas campestris pv. vesicatoria SBML MML
ypa00628 Yersinia pestis Antiqua SBML MML
ype00628 Yersinia pestis CO92 SBML MML
ypg00628 Yersinia pestis Angola SBML MML
ypi00628 Yersinia pseudotuberculosis IP31758 SBML MML
ypk00628 Yersinia pestis KIM SBML MML
ypm00628 Yersinia pestis Mediaevails SBML MML
ypn00628 Yersinia pestis Nepal516 SBML MML
ypp00628 Yersinia pestis Pestoides SBML MML
yps00628 Yersinia pseudotuberculosis IP32953 SBML MML
ypy00628 Yersinia pseudotuberculosis YPIII SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.