This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00941: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aau00941 Arthrobacter aurescens SBML MML
aba00941 Acidobacteria bacterium SBML MML
acb00941 Acinetobacter baumannii ATCC 17978 SBML MML
acr00941 Acidiphilium cryptum JF-5 SBML MML
afm00941 Aspergillus fumigatus SBML MML
afw00941 Anaeromyxobacter sp. Fw109-5 SBML MML
amr00941 Acaryochloris marina SBML MML
ana00941 Anabaena sp. PCC7120 SBML MML
ang00941 Aspergillus niger SBML MML
aor00941 Aspergillus oryzae SBML MML
art00941 Arthrobacter sp. FB24 SBML MML
ath00941 Arabidopsis thaliana (thale cress) SBML MML
ava00941 Anabaena variabilis SBML MML
azc00941 Azorhizobium caulinodans SBML MML
bac00941 Burkholderia ambifaria MC40-6 SBML MML
bam00941 Burkholderia cepacia SBML MML
bay00941 Bacillus amyloliquefaciens SBML MML
bba00941 Bdellovibrio bacteriovorus SBML MML
bbt00941 Bradyrhizobium sp. BTAi1 SBML MML
bch00941 Burkholderia cenocepacia HI2424 SBML MML
bcl00941 Bacillus clausii SBML MML
bcm00941 Burkholderia cenocepacia MC0-3 SBML MML
bcn00941 Burkholderia cenocepacia AU1054 SBML MML
bha00941 Bacillus halodurans SBML MML
bid00941 Beijerinckia indica SBML MML
bja00941 Bradyrhizobium japonicum SBML MML
bld00941 Bacillus licheniformis DSM13 SBML MML
bma00941 Burkholderia mallei ATCC 23344 SBML MML
bml00941 Burkholderia mallei NCTC 10229 SBML MML
bmn00941 Burkholderia mallei NCTC 10247 SBML MML
bmu00941 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00941 Burkholderia mallei SAVP1 SBML MML
bpd00941 Burkholderia pseudomallei 668 SBML MML
bph00941 Burkholderia phymatum SBML MML
bpl00941 Burkholderia pseudomallei 1106a SBML MML
bpm00941 Burkholderia pseudomallei 1710b SBML MML
bps00941 Burkholderia pseudomallei K96243 SBML MML
bpu00941 Bacillus pumilus SBML MML
bra00941 Bradyrhizobium sp. ORS278 SBML MML
bsu00941 Bacillus subtilis SBML MML
bte00941 Burkholderia thailandensis SBML MML
bur00941 Burkholderia sp. 383 SBML MML
bvi00941 Burkholderia vietnamiensis SBML MML
bxe00941 Burkholderia xenovorans SBML MML
cak00941 Caulobacter sp. K31 SBML MML
cau00941 Chloroflexus aurantiacus SBML MML
cch00941 Chlorobium chlorochromatii SBML MML
chu00941 Cytophaga hutchinsonii SBML MML
cmi00941 Clavibacter michiganensis subsp. michiganensis SBML MML
cms00941 Clavibacter michiganensis subsp. sepedonicus SBML MML
cpb00941 Chlorobium phaeobacteroides BS1 SBML MML
cph00941 Chlorobium phaeobacteroides DSM 266 SBML MML
cre00941 Chlamydomonas reinhardtii SBML MML
cte00941 Chlorobaculum tepidum SBML MML
cvi00941 Chromobacterium violaceum SBML MML
cyt00941 Cyanothece sp. ATCC 51142 SBML MML
dame00941 (Undocumented) SBML MML
dcbr00941 (Undocumented) SBML MML
deb00941 Dehalococcoides sp. BAV1 SBML MML
deh00941 Dehalococcoides sp. CBDB1 SBML MML
dge00941 Deinococcus geothermalis SBML MML
dha00941 Debaryomyces hansenii SBML MML
dpop00941 (Undocumented) SBML MML
dptm00941 (Undocumented) SBML MML
dra00941 Deinococcus radiodurans SBML MML
dvvi00941 (Undocumented) SBML MML
eacp00941 (Undocumented) SBML MML
eath00941 Arabidopsis thaliana (thale cress) (EST) SBML MML
ebna00941 Brassica napus (rape) (EST) SBML MML
ebvl00941 Beta vulgaris (beet) (EST) SBML MML
ecan00941 Capsicum annuum (chile pepper) (EST) SBML MML
ecsi00941 Citrus sinensis (Valencia orange) (EST) SBML MML
eees00941 Euphorbia esula (leafy spurge) (EST) SBML MML
efar00941 Festuca arundinacea (tall fescue) (EST) SBML MML
egar00941 Gossypium arboreum (tree cotton) (EST) SBML MML
eghi00941 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00941 Glycine max (soybean) (EST) SBML MML
egra00941 Gossypium raimondii (EST) SBML MML
ehan00941 Helianthus annuus (sunflower) (EST) SBML MML
ehvu00941 Hordeum vulgare (barley) (EST) SBML MML
eini00941 Ipomoea nil (Japanese morning glory) (EST) SBML MML
elja00941 Lotus japonicus (lotus) (EST) SBML MML
elpe00941 Lactuca perennis (blue lettuce) (EST) SBML MML
elsi00941 Lactuca saligna (willow-leaf lettuce) (EST) SBML MML
elst00941 Lactuca sativa (lettuce) (EST) SBML MML
elvi00941 Lactuca virosa (wild lettuce) (EST) SBML MML
emec00941 Manihot esculenta (cassava) (EST) SBML MML
emtr00941 Medicago truncatula (barrel medic) (EST) SBML MML
enbe00941 Nicotiana benthamiana (EST) SBML MML
enta00941 Nicotiana tabacum (tobacco) (EST) SBML MML
eosa00941 Oryza sativa (rice) (EST) SBML MML
eosi00941 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00941 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00941 Picea glauca (white spruce) (EST) SBML MML
epop00941 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppa00941 (Undocumented) SBML MML
eppi00941 Pinus pinaster (maritime pine) (EST) SBML MML
eppp00941 Physcomitrella patens subsp. patens (EST) SBML MML
epps00941 Prunus persica (peach) (EST) SBML MML
epsi00941 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00941 Pinus taeda (loblolly pine) (EST) SBML MML
eptp00941 Populus tremula (European aspen) (EST) SBML MML
esbi00941 Sorghum bicolor (sorghum) (EST) SBML MML
esly00941 Solanum lycopersicum (tomato) (EST) SBML MML
esof00941 Saccharum officinarum (sugarcane) (EST) SBML MML
espp00941 (Undocumented) SBML MML
espu00941 Strongylocentrotus purpuratus (purple sea urchin) (EST) SBML MML
estu00941 Solanum tuberosum (potato) (EST) SBML MML
etae00941 Triticum aestivum (wheat) (EST) SBML MML
evvi00941 Vitis vinifera (wine grape) (EST) SBML MML
ezel00941 (Undocumented) SBML MML
ezma00941 Zea mays (maize) (EST) SBML MML
fal00941 Frankia alni SBML MML
fgr00941 Fusarium graminearum SBML MML
fjo00941 Flavobacterium johnsoniae SBML MML
fno00941 Fervidobacterium nodosum SBML MML
fra00941 Frankia sp. CcI3 SBML MML
fre00941 Frankia sp. EAN1pec SBML MML
gdi00941 Gluconacetobacter diazotrophicus PAl 5 (Brazil) SBML MML
gfo00941 Gramella forsetii SBML MML
gka00941 Geobacillus kaustophilus SBML MML
glo00941 Geobacter lovleyi SBML MML
gme00941 Geobacter metallireducens SBML MML
gox00941 Gluconobacter oxydans SBML MML
gsu00941 Geobacter sulfurreducens SBML MML
gur00941 Geobacter uraniumreducens SBML MML
gvi00941 Gloeobacter violaceus SBML MML
hau00941 Herpetosiphon aurantiacus SBML MML
hch00941 Hahella chejuensis SBML MML
hmo00941 Heliobacterium modesticaldum SBML MML
jan00941 Jannaschia sp. CCS1 SBML MML
kla00941 Kluyveromyces lactis SBML MML
kra00941 Kineococcus radiotolerans SBML MML
krh00941 Kocuria rhizophila SBML MML
lbc00941 Laccaria bicolor SBML MML
llm00941 Lactococcus lactis subsp. cremoris MG1363 SBML MML
lsa00941 Lactobacillus sakei SBML MML
lsp00941 Lysinibacillus sphaericus SBML MML
mag00941 Magnetospirillum magneticum SBML MML
mav00941 Mycobacterium avium 104 SBML MML
mbb00941 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbo00941 Mycobacterium bovis AF2122/97 SBML MML
mbr00941 Monosiga brevicollis SBML MML
mca00941 Methylococcus capsulatus SBML MML
met00941 Methylobacterium sp. 4-46 SBML MML
mex00941 Methylobacterium extorquens SBML MML
mgi00941 Mycobacterium gilvum SBML MML
mgl00941 Malassezia globosa SBML MML
mjl00941 Mycobacterium sp. JLS SBML MML
mkm00941 Mycobacterium sp. KMS SBML MML
mmc00941 Mycobacterium sp. MCS SBML MML
mmi00941 Mycobacterium marinum M SBML MML
mpa00941 Mycobacterium avium paratuberculosis SBML MML
mra00941 Mycobacterium tuberculosis H37Ra SBML MML
mrd00941 Methylobacterium radiotolerans SBML MML
msm00941 Mycobacterium smegmatis SBML MML
mtc00941 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00941 Mycobacterium tuberculosis F11 SBML MML
mtu00941 Mycobacterium tuberculosis H37Rv SBML MML
mul00941 Mycobacterium ulcerans SBML MML
mva00941 Mycobacterium vanbaalenii SBML MML
ncr00941 Neurospora crassa SBML MML
neu00941 Nitrosomonas europaea SBML MML
nha00941 Nitrobacter hamburgensis SBML MML
nmu00941 Nitrosospira multiformis SBML MML
noc00941 Nitrosococcus oceani SBML MML
npu00941 Nostoc punctiforme SBML MML
oih00941 Oceanobacillus iheyensis SBML MML
osa00941 Oryza sativa japonica (Japanese rice) SBML MML
ote00941 Opitutus terrae SBML MML
pan00941 Podospora anserina SBML MML
pap00941 Pseudomonas aeruginosa PA7 SBML MML
par00941 Psychrobacter arcticum SBML MML
pau00941 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pic00941 Pichia stipitis SBML MML
pin00941 Psychromonas ingrahamii SBML MML
pla00941 Parvibaculum lavamentivorans SBML MML
plt00941 Pelodictyon luteolum SBML MML
pmc00941 Prochlorococcus marinus MIT 9515 SBML MML
pmf00941 Prochlorococcus marinus MIT 9303 SBML MML
pmm00941 Prochlorococcus marinus MED4 SBML MML
pmt00941 Prochlorococcus marinus MIT9313 SBML MML
ppd00941 Pelobacter propionicus SBML MML
ppp00941 Physcomitrella patens subsp. patens SBML MML
pvi00941 Prosthecochloris vibrioformis SBML MML
rba00941 Rhodopirellula baltica SBML MML
reh00941 Ralstonia eutropha H16 SBML MML
ret00941 Rhizobium etli CFN 42 SBML MML
reu00941 Ralstonia eutropha JMP134 SBML MML
rle00941 Rhizobium leguminosarum SBML MML
rme00941 Ralstonia metallidurans SBML MML
rrs00941 Roseiflexus sp. RS-1 SBML MML
rru00941 Rhodospirillum rubrum SBML MML
rsa00941 Renibacterium salmoninarum SBML MML
rsp00941 Rhodobacter sphaeroides 2.4.1 SBML MML
rxy00941 Rubrobacter xylanophilus SBML MML
saq00941 Salinispora arenicola SBML MML
sbm00941 Shewanella baltica OS185 SBML MML
sbn00941 Shewanella baltica OS195 SBML MML
scl00941 Sorangium cellulosum SBML MML
sco00941 Streptomyces coelicolor SBML MML
sen00941 Saccharopolyspora erythraea SBML MML
sgl00941 Sodalis glossinidius SBML MML
sgr00941 Streptomyces griseus SBML MML
shl00941 Shewanella halifaxensis SBML MML
sma00941 Streptomyces avermitilis SBML MML
spc00941 Shewanella putrefaciens SBML MML
spl00941 Shewanella pealeana SBML MML
ssa00941 Streptococcus sanguinis SBML MML
stp00941 Salinispora tropica SBML MML
swd00941 Shewanella woodyi ATCC 51908 SBML MML
sye00941 Synechococcus sp. CC9902 SBML MML
syg00941 Synechococcus sp. CC9311 SBML MML
syn00941 Synechocystis sp. PCC6803 SBML MML
syw00941 Synechococcus sp. WH8102 SBML MML
syx00941 Synechococcus sp. WH7803 SBML MML
tel00941 Thermosynechococcus elongatus SBML MML
tet00941 Tetrahymena thermophila SBML MML
tle00941 Thermotoga lettingae SBML MML
tme00941 Thermosipho melanesiensis SBML MML
uma00941 Ustilago maydis SBML MML
vpo00941 Vanderwaltozyma polyspora SBML MML
yli00941 Yarrowia lipolytica SBML MML
zmo00941 Zymomonas mobilis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.