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Kegg pathway models for JSim

Organism atc: Agrobacterium tumefaciens C58 (Cereon)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
atc00010 Glycolysis / Gluconeogenesis SBML MML
atc00020 Citrate cycle (TCA cycle) SBML MML
atc00030 Pentose phosphate pathway SBML MML
atc00031 (Undocumented) SBML MML
atc00040 Pentose and glucuronate interconversions SBML MML
atc00051 Fructose and mannose metabolism SBML MML
atc00052 Galactose metabolism SBML MML
atc00053 Ascorbate and aldarate metabolism SBML MML
atc00061 Fatty acid biosynthesis SBML MML
atc00062 Fatty acid elongation in mitochondria SBML MML
atc00071 Fatty acid metabolism SBML MML
atc00072 Synthesis and degradation of ketone bodies SBML MML
atc00100 (Undocumented) SBML MML
atc00120 (Undocumented) SBML MML
atc00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
atc00150 Androgen and estrogen metabolism SBML MML
atc00220 (Undocumented) SBML MML
atc00230 Purine metabolism SBML MML
atc00240 Pyrimidine metabolism SBML MML
atc00251 (Undocumented) SBML MML
atc00252 (Undocumented) SBML MML
atc00260 Glycine, serine and threonine metabolism SBML MML
atc00271 (Undocumented) SBML MML
atc00272 (Undocumented) SBML MML
atc00280 Valine, leucine and isoleucine degradation SBML MML
atc00281 Geraniol degradation SBML MML
atc00290 Valine, leucine and isoleucine biosynthesis SBML MML
atc00300 Lysine biosynthesis SBML MML
atc00310 Lysine degradation SBML MML
atc00330 Arginine and proline metabolism SBML MML
atc00340 Histidine metabolism SBML MML
atc00350 Tyrosine metabolism SBML MML
atc00360 Phenylalanine metabolism SBML MML
atc00361 gamma-Hexachlorocyclohexane degradation SBML MML
atc00362 (Undocumented) SBML MML
atc00363 Bisphenol A degradation SBML MML
atc00364 Fluorobenzoate degradation SBML MML
atc00380 Tryptophan metabolism SBML MML
atc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
atc00401 Novobiocin biosynthesis SBML MML
atc00410 beta-Alanine metabolism SBML MML
atc00440 Phosphonate and phosphinate metabolism SBML MML
atc00450 Selenoamino acid metabolism SBML MML
atc00460 (Undocumented) SBML MML
atc00471 D-Glutamine and D-glutamate metabolism SBML MML
atc00472 D-Arginine and D-ornithine metabolism SBML MML
atc00473 D-Alanine metabolism SBML MML
atc00480 Glutathione metabolism SBML MML
atc00500 Starch and sucrose metabolism SBML MML
atc00510 (Undocumented) SBML MML
atc00520 Amino sugar and nucleotide sugar metabolism SBML MML
atc00521 Streptomycin biosynthesis SBML MML
atc00523 Polyketide sugar unit biosynthesis SBML MML
atc00530 (Undocumented) SBML MML
atc00540 Lipopolysaccharide biosynthesis SBML MML
atc00550 Peptidoglycan biosynthesis SBML MML
atc00561 Glycerolipid metabolism SBML MML
atc00562 Inositol phosphate metabolism SBML MML
atc00564 Glycerophospholipid metabolism SBML MML
atc00592 alpha-Linolenic acid metabolism SBML MML
atc00600 Sphingolipid metabolism SBML MML
atc00620 Pyruvate metabolism SBML MML
atc00622 Toluene and xylene degradation SBML MML
atc00623 2,4-Dichlorobenzoate degradation SBML MML
atc00624 1- and 2-Methylnaphthalene degradation SBML MML
atc00626 Naphthalene and anthracene degradation SBML MML
atc00627 1,4-Dichlorobenzene degradation SBML MML
atc00628 Fluorene degradation SBML MML
atc00630 Glyoxylate and dicarboxylate metabolism SBML MML
atc00631 1,2-Dichloroethane degradation SBML MML
atc00632 (Undocumented) SBML MML
atc00633 Trinitrotoluene degradation SBML MML
atc00640 Propanoate metabolism SBML MML
atc00641 3-Chloroacrylic acid degradation SBML MML
atc00642 Ethylbenzene degradation SBML MML
atc00650 Butanoate metabolism SBML MML
atc00660 C5-Branched dibasic acid metabolism SBML MML
atc00670 One carbon pool by folate SBML MML
atc00680 Methane metabolism SBML MML
atc00710 (Undocumented) SBML MML
atc00720 (Undocumented) SBML MML
atc00730 Thiamine metabolism SBML MML
atc00740 Riboflavin metabolism SBML MML
atc00750 Vitamin B6 metabolism SBML MML
atc00760 Nicotinate and nicotinamide metabolism SBML MML
atc00770 Pantothenate and CoA biosynthesis SBML MML
atc00780 Biotin metabolism SBML MML
atc00785 Lipoic acid metabolism SBML MML
atc00790 Folate biosynthesis SBML MML
atc00860 Porphyrin and chlorophyll metabolism SBML MML
atc00900 Terpenoid backbone biosynthesis SBML MML
atc00903 (Undocumented) SBML MML
atc00910 Nitrogen metabolism SBML MML
atc00920 Sulfur metabolism SBML MML
atc00930 Caprolactam degradation SBML MML
atc00940 (Undocumented) SBML MML
atc00950 (Undocumented) SBML MML
atc00960 (Undocumented) SBML MML
atc00970 Aminoacyl-tRNA biosynthesis SBML MML
atc00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
atc00982 (Undocumented) SBML MML
atc00983 (Undocumented) SBML MML

Model development and archiving support at provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.