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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bab: Buchnera aphidicola Bp

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bab00010 Glycolysis / Gluconeogenesis SBML MML
bab00020 Citrate cycle (TCA cycle) SBML MML
bab00030 Pentose phosphate pathway SBML MML
bab00040 Pentose and glucuronate interconversions SBML MML
bab00051 Fructose and mannose metabolism SBML MML
bab00061 Fatty acid biosynthesis SBML MML
bab00220 (Undocumented) SBML MML
bab00230 Purine metabolism SBML MML
bab00240 Pyrimidine metabolism SBML MML
bab00251 (Undocumented) SBML MML
bab00252 (Undocumented) SBML MML
bab00260 Glycine, serine and threonine metabolism SBML MML
bab00271 (Undocumented) SBML MML
bab00272 (Undocumented) SBML MML
bab00280 Valine, leucine and isoleucine degradation SBML MML
bab00290 Valine, leucine and isoleucine biosynthesis SBML MML
bab00300 Lysine biosynthesis SBML MML
bab00310 Lysine degradation SBML MML
bab00330 Arginine and proline metabolism SBML MML
bab00340 Histidine metabolism SBML MML
bab00350 Tyrosine metabolism SBML MML
bab00380 Tryptophan metabolism SBML MML
bab00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bab00430 Taurine and hypotaurine metabolism SBML MML
bab00450 Selenoamino acid metabolism SBML MML
bab00471 D-Glutamine and D-glutamate metabolism SBML MML
bab00480 Glutathione metabolism SBML MML
bab00530 (Undocumented) SBML MML
bab00550 Peptidoglycan biosynthesis SBML MML
bab00562 Inositol phosphate metabolism SBML MML
bab00620 Pyruvate metabolism SBML MML
bab00630 Glyoxylate and dicarboxylate metabolism SBML MML
bab00640 Propanoate metabolism SBML MML
bab00650 Butanoate metabolism SBML MML
bab00670 One carbon pool by folate SBML MML
bab00680 Methane metabolism SBML MML
bab00710 (Undocumented) SBML MML
bab00740 Riboflavin metabolism SBML MML
bab00750 Vitamin B6 metabolism SBML MML
bab00760 Nicotinate and nicotinamide metabolism SBML MML
bab00770 Pantothenate and CoA biosynthesis SBML MML
bab00780 Biotin metabolism SBML MML
bab00785 Lipoic acid metabolism SBML MML
bab00790 Folate biosynthesis SBML MML
bab00860 Porphyrin and chlorophyll metabolism SBML MML
bab00900 Terpenoid backbone biosynthesis SBML MML
bab00970 Aminoacyl-tRNA biosynthesis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.