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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ban: Bacillus anthracis Ames

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ban00010 Glycolysis / Gluconeogenesis SBML MML
ban00020 Citrate cycle (TCA cycle) SBML MML
ban00030 Pentose phosphate pathway SBML MML
ban00031 (Undocumented) SBML MML
ban00040 Pentose and glucuronate interconversions SBML MML
ban00051 Fructose and mannose metabolism SBML MML
ban00052 Galactose metabolism SBML MML
ban00053 Ascorbate and aldarate metabolism SBML MML
ban00061 Fatty acid biosynthesis SBML MML
ban00062 Fatty acid elongation in mitochondria SBML MML
ban00071 Fatty acid metabolism SBML MML
ban00072 Synthesis and degradation of ketone bodies SBML MML
ban00100 (Undocumented) SBML MML
ban00120 (Undocumented) SBML MML
ban00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ban00150 Androgen and estrogen metabolism SBML MML
ban00220 (Undocumented) SBML MML
ban00230 Purine metabolism SBML MML
ban00240 Pyrimidine metabolism SBML MML
ban00251 (Undocumented) SBML MML
ban00252 (Undocumented) SBML MML
ban00260 Glycine, serine and threonine metabolism SBML MML
ban00271 (Undocumented) SBML MML
ban00272 (Undocumented) SBML MML
ban00280 Valine, leucine and isoleucine degradation SBML MML
ban00281 Geraniol degradation SBML MML
ban00290 Valine, leucine and isoleucine biosynthesis SBML MML
ban00300 Lysine biosynthesis SBML MML
ban00310 Lysine degradation SBML MML
ban00311 Penicillin and cephalosporin biosynthesis SBML MML
ban00330 Arginine and proline metabolism SBML MML
ban00340 Histidine metabolism SBML MML
ban00350 Tyrosine metabolism SBML MML
ban00360 Phenylalanine metabolism SBML MML
ban00361 gamma-Hexachlorocyclohexane degradation SBML MML
ban00362 (Undocumented) SBML MML
ban00363 Bisphenol A degradation SBML MML
ban00380 Tryptophan metabolism SBML MML
ban00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ban00401 Novobiocin biosynthesis SBML MML
ban00410 beta-Alanine metabolism SBML MML
ban00430 Taurine and hypotaurine metabolism SBML MML
ban00440 Phosphonate and phosphinate metabolism SBML MML
ban00450 Selenoamino acid metabolism SBML MML
ban00460 (Undocumented) SBML MML
ban00471 D-Glutamine and D-glutamate metabolism SBML MML
ban00472 D-Arginine and D-ornithine metabolism SBML MML
ban00473 D-Alanine metabolism SBML MML
ban00480 Glutathione metabolism SBML MML
ban00500 Starch and sucrose metabolism SBML MML
ban00510 (Undocumented) SBML MML
ban00520 Amino sugar and nucleotide sugar metabolism SBML MML
ban00521 Streptomycin biosynthesis SBML MML
ban00523 Polyketide sugar unit biosynthesis SBML MML
ban00530 (Undocumented) SBML MML
ban00550 Peptidoglycan biosynthesis SBML MML
ban00561 Glycerolipid metabolism SBML MML
ban00562 Inositol phosphate metabolism SBML MML
ban00564 Glycerophospholipid metabolism SBML MML
ban00565 Ether lipid metabolism SBML MML
ban00590 Arachidonic acid metabolism SBML MML
ban00592 alpha-Linolenic acid metabolism SBML MML
ban00620 Pyruvate metabolism SBML MML
ban00622 Toluene and xylene degradation SBML MML
ban00624 1- and 2-Methylnaphthalene degradation SBML MML
ban00626 Naphthalene and anthracene degradation SBML MML
ban00627 1,4-Dichlorobenzene degradation SBML MML
ban00630 Glyoxylate and dicarboxylate metabolism SBML MML
ban00631 1,2-Dichloroethane degradation SBML MML
ban00632 (Undocumented) SBML MML
ban00640 Propanoate metabolism SBML MML
ban00641 3-Chloroacrylic acid degradation SBML MML
ban00642 Ethylbenzene degradation SBML MML
ban00643 Styrene degradation SBML MML
ban00650 Butanoate metabolism SBML MML
ban00660 C5-Branched dibasic acid metabolism SBML MML
ban00670 One carbon pool by folate SBML MML
ban00680 Methane metabolism SBML MML
ban00710 (Undocumented) SBML MML
ban00720 (Undocumented) SBML MML
ban00730 Thiamine metabolism SBML MML
ban00740 Riboflavin metabolism SBML MML
ban00750 Vitamin B6 metabolism SBML MML
ban00760 Nicotinate and nicotinamide metabolism SBML MML
ban00770 Pantothenate and CoA biosynthesis SBML MML
ban00780 Biotin metabolism SBML MML
ban00785 Lipoic acid metabolism SBML MML
ban00790 Folate biosynthesis SBML MML
ban00860 Porphyrin and chlorophyll metabolism SBML MML
ban00900 Terpenoid backbone biosynthesis SBML MML
ban00903 (Undocumented) SBML MML
ban00910 Nitrogen metabolism SBML MML
ban00920 Sulfur metabolism SBML MML
ban00930 Caprolactam degradation SBML MML
ban00960 (Undocumented) SBML MML
ban00970 Aminoacyl-tRNA biosynthesis SBML MML
ban00982 (Undocumented) SBML MML
ban00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.