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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bar: Bacillus anthracis Ames 0581

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bar00010 Glycolysis / Gluconeogenesis SBML MML
bar00020 Citrate cycle (TCA cycle) SBML MML
bar00030 Pentose phosphate pathway SBML MML
bar00031 (Undocumented) SBML MML
bar00040 Pentose and glucuronate interconversions SBML MML
bar00051 Fructose and mannose metabolism SBML MML
bar00052 Galactose metabolism SBML MML
bar00053 Ascorbate and aldarate metabolism SBML MML
bar00061 Fatty acid biosynthesis SBML MML
bar00062 Fatty acid elongation in mitochondria SBML MML
bar00071 Fatty acid metabolism SBML MML
bar00072 Synthesis and degradation of ketone bodies SBML MML
bar00100 (Undocumented) SBML MML
bar00120 (Undocumented) SBML MML
bar00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bar00220 (Undocumented) SBML MML
bar00230 Purine metabolism SBML MML
bar00240 Pyrimidine metabolism SBML MML
bar00251 (Undocumented) SBML MML
bar00252 (Undocumented) SBML MML
bar00260 Glycine, serine and threonine metabolism SBML MML
bar00271 (Undocumented) SBML MML
bar00272 (Undocumented) SBML MML
bar00280 Valine, leucine and isoleucine degradation SBML MML
bar00281 Geraniol degradation SBML MML
bar00290 Valine, leucine and isoleucine biosynthesis SBML MML
bar00300 Lysine biosynthesis SBML MML
bar00310 Lysine degradation SBML MML
bar00311 Penicillin and cephalosporin biosynthesis SBML MML
bar00330 Arginine and proline metabolism SBML MML
bar00340 Histidine metabolism SBML MML
bar00350 Tyrosine metabolism SBML MML
bar00360 Phenylalanine metabolism SBML MML
bar00361 gamma-Hexachlorocyclohexane degradation SBML MML
bar00362 (Undocumented) SBML MML
bar00380 Tryptophan metabolism SBML MML
bar00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bar00401 Novobiocin biosynthesis SBML MML
bar00410 beta-Alanine metabolism SBML MML
bar00430 Taurine and hypotaurine metabolism SBML MML
bar00440 Phosphonate and phosphinate metabolism SBML MML
bar00450 Selenoamino acid metabolism SBML MML
bar00460 (Undocumented) SBML MML
bar00471 D-Glutamine and D-glutamate metabolism SBML MML
bar00472 D-Arginine and D-ornithine metabolism SBML MML
bar00473 D-Alanine metabolism SBML MML
bar00480 Glutathione metabolism SBML MML
bar00500 Starch and sucrose metabolism SBML MML
bar00510 (Undocumented) SBML MML
bar00520 Amino sugar and nucleotide sugar metabolism SBML MML
bar00521 Streptomycin biosynthesis SBML MML
bar00523 Polyketide sugar unit biosynthesis SBML MML
bar00530 (Undocumented) SBML MML
bar00550 Peptidoglycan biosynthesis SBML MML
bar00561 Glycerolipid metabolism SBML MML
bar00562 Inositol phosphate metabolism SBML MML
bar00564 Glycerophospholipid metabolism SBML MML
bar00565 Ether lipid metabolism SBML MML
bar00590 Arachidonic acid metabolism SBML MML
bar00592 alpha-Linolenic acid metabolism SBML MML
bar00620 Pyruvate metabolism SBML MML
bar00624 1- and 2-Methylnaphthalene degradation SBML MML
bar00626 Naphthalene and anthracene degradation SBML MML
bar00630 Glyoxylate and dicarboxylate metabolism SBML MML
bar00631 1,2-Dichloroethane degradation SBML MML
bar00632 (Undocumented) SBML MML
bar00640 Propanoate metabolism SBML MML
bar00641 3-Chloroacrylic acid degradation SBML MML
bar00642 Ethylbenzene degradation SBML MML
bar00643 Styrene degradation SBML MML
bar00650 Butanoate metabolism SBML MML
bar00660 C5-Branched dibasic acid metabolism SBML MML
bar00670 One carbon pool by folate SBML MML
bar00680 Methane metabolism SBML MML
bar00710 (Undocumented) SBML MML
bar00720 (Undocumented) SBML MML
bar00730 Thiamine metabolism SBML MML
bar00740 Riboflavin metabolism SBML MML
bar00750 Vitamin B6 metabolism SBML MML
bar00760 Nicotinate and nicotinamide metabolism SBML MML
bar00770 Pantothenate and CoA biosynthesis SBML MML
bar00780 Biotin metabolism SBML MML
bar00785 Lipoic acid metabolism SBML MML
bar00790 Folate biosynthesis SBML MML
bar00860 Porphyrin and chlorophyll metabolism SBML MML
bar00900 Terpenoid backbone biosynthesis SBML MML
bar00903 (Undocumented) SBML MML
bar00910 Nitrogen metabolism SBML MML
bar00920 Sulfur metabolism SBML MML
bar00930 Caprolactam degradation SBML MML
bar00960 (Undocumented) SBML MML
bar00970 Aminoacyl-tRNA biosynthesis SBML MML
bar00982 (Undocumented) SBML MML
bar00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.