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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bme: Brucella melitensis 16M

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bme00010 Glycolysis / Gluconeogenesis SBML MML
bme00020 Citrate cycle (TCA cycle) SBML MML
bme00030 Pentose phosphate pathway SBML MML
bme00031 (Undocumented) SBML MML
bme00040 Pentose and glucuronate interconversions SBML MML
bme00051 Fructose and mannose metabolism SBML MML
bme00052 Galactose metabolism SBML MML
bme00053 Ascorbate and aldarate metabolism SBML MML
bme00061 Fatty acid biosynthesis SBML MML
bme00062 Fatty acid elongation in mitochondria SBML MML
bme00071 Fatty acid metabolism SBML MML
bme00072 Synthesis and degradation of ketone bodies SBML MML
bme00100 (Undocumented) SBML MML
bme00120 (Undocumented) SBML MML
bme00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bme00150 Androgen and estrogen metabolism SBML MML
bme00220 (Undocumented) SBML MML
bme00230 Purine metabolism SBML MML
bme00240 Pyrimidine metabolism SBML MML
bme00251 (Undocumented) SBML MML
bme00252 (Undocumented) SBML MML
bme00260 Glycine, serine and threonine metabolism SBML MML
bme00271 (Undocumented) SBML MML
bme00272 (Undocumented) SBML MML
bme00280 Valine, leucine and isoleucine degradation SBML MML
bme00281 Geraniol degradation SBML MML
bme00290 Valine, leucine and isoleucine biosynthesis SBML MML
bme00300 Lysine biosynthesis SBML MML
bme00310 Lysine degradation SBML MML
bme00330 Arginine and proline metabolism SBML MML
bme00340 Histidine metabolism SBML MML
bme00350 Tyrosine metabolism SBML MML
bme00360 Phenylalanine metabolism SBML MML
bme00361 gamma-Hexachlorocyclohexane degradation SBML MML
bme00362 (Undocumented) SBML MML
bme00363 Bisphenol A degradation SBML MML
bme00364 Fluorobenzoate degradation SBML MML
bme00380 Tryptophan metabolism SBML MML
bme00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bme00401 Novobiocin biosynthesis SBML MML
bme00410 beta-Alanine metabolism SBML MML
bme00430 Taurine and hypotaurine metabolism SBML MML
bme00440 Phosphonate and phosphinate metabolism SBML MML
bme00450 Selenoamino acid metabolism SBML MML
bme00460 (Undocumented) SBML MML
bme00471 D-Glutamine and D-glutamate metabolism SBML MML
bme00472 D-Arginine and D-ornithine metabolism SBML MML
bme00473 D-Alanine metabolism SBML MML
bme00480 Glutathione metabolism SBML MML
bme00500 Starch and sucrose metabolism SBML MML
bme00510 (Undocumented) SBML MML
bme00520 Amino sugar and nucleotide sugar metabolism SBML MML
bme00521 Streptomycin biosynthesis SBML MML
bme00523 Polyketide sugar unit biosynthesis SBML MML
bme00530 (Undocumented) SBML MML
bme00540 Lipopolysaccharide biosynthesis SBML MML
bme00550 Peptidoglycan biosynthesis SBML MML
bme00561 Glycerolipid metabolism SBML MML
bme00562 Inositol phosphate metabolism SBML MML
bme00564 Glycerophospholipid metabolism SBML MML
bme00620 Pyruvate metabolism SBML MML
bme00621 (Undocumented) SBML MML
bme00622 Toluene and xylene degradation SBML MML
bme00623 2,4-Dichlorobenzoate degradation SBML MML
bme00624 1- and 2-Methylnaphthalene degradation SBML MML
bme00626 Naphthalene and anthracene degradation SBML MML
bme00627 1,4-Dichlorobenzene degradation SBML MML
bme00628 Fluorene degradation SBML MML
bme00630 Glyoxylate and dicarboxylate metabolism SBML MML
bme00631 1,2-Dichloroethane degradation SBML MML
bme00632 (Undocumented) SBML MML
bme00640 Propanoate metabolism SBML MML
bme00641 3-Chloroacrylic acid degradation SBML MML
bme00643 Styrene degradation SBML MML
bme00650 Butanoate metabolism SBML MML
bme00660 C5-Branched dibasic acid metabolism SBML MML
bme00670 One carbon pool by folate SBML MML
bme00680 Methane metabolism SBML MML
bme00710 (Undocumented) SBML MML
bme00720 (Undocumented) SBML MML
bme00730 Thiamine metabolism SBML MML
bme00740 Riboflavin metabolism SBML MML
bme00750 Vitamin B6 metabolism SBML MML
bme00760 Nicotinate and nicotinamide metabolism SBML MML
bme00770 Pantothenate and CoA biosynthesis SBML MML
bme00780 Biotin metabolism SBML MML
bme00785 Lipoic acid metabolism SBML MML
bme00790 Folate biosynthesis SBML MML
bme00791 Atrazine degradation SBML MML
bme00860 Porphyrin and chlorophyll metabolism SBML MML
bme00900 Terpenoid backbone biosynthesis SBML MML
bme00903 (Undocumented) SBML MML
bme00904 (Undocumented) SBML MML
bme00910 Nitrogen metabolism SBML MML
bme00920 Sulfur metabolism SBML MML
bme00930 Caprolactam degradation SBML MML
bme00940 (Undocumented) SBML MML
bme00950 (Undocumented) SBML MML
bme00960 (Undocumented) SBML MML
bme00970 Aminoacyl-tRNA biosynthesis SBML MML
bme00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bme00982 (Undocumented) SBML MML
bme00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.