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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bpa: Bordetella parapertussis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bpa00010 Glycolysis / Gluconeogenesis SBML MML
bpa00020 Citrate cycle (TCA cycle) SBML MML
bpa00030 Pentose phosphate pathway SBML MML
bpa00031 (Undocumented) SBML MML
bpa00040 Pentose and glucuronate interconversions SBML MML
bpa00051 Fructose and mannose metabolism SBML MML
bpa00052 Galactose metabolism SBML MML
bpa00053 Ascorbate and aldarate metabolism SBML MML
bpa00061 Fatty acid biosynthesis SBML MML
bpa00062 Fatty acid elongation in mitochondria SBML MML
bpa00071 Fatty acid metabolism SBML MML
bpa00072 Synthesis and degradation of ketone bodies SBML MML
bpa00100 (Undocumented) SBML MML
bpa00120 (Undocumented) SBML MML
bpa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bpa00220 (Undocumented) SBML MML
bpa00230 Purine metabolism SBML MML
bpa00240 Pyrimidine metabolism SBML MML
bpa00251 (Undocumented) SBML MML
bpa00252 (Undocumented) SBML MML
bpa00260 Glycine, serine and threonine metabolism SBML MML
bpa00271 (Undocumented) SBML MML
bpa00272 (Undocumented) SBML MML
bpa00280 Valine, leucine and isoleucine degradation SBML MML
bpa00281 Geraniol degradation SBML MML
bpa00290 Valine, leucine and isoleucine biosynthesis SBML MML
bpa00300 Lysine biosynthesis SBML MML
bpa00310 Lysine degradation SBML MML
bpa00330 Arginine and proline metabolism SBML MML
bpa00340 Histidine metabolism SBML MML
bpa00350 Tyrosine metabolism SBML MML
bpa00360 Phenylalanine metabolism SBML MML
bpa00361 gamma-Hexachlorocyclohexane degradation SBML MML
bpa00362 (Undocumented) SBML MML
bpa00364 Fluorobenzoate degradation SBML MML
bpa00380 Tryptophan metabolism SBML MML
bpa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bpa00401 Novobiocin biosynthesis SBML MML
bpa00410 beta-Alanine metabolism SBML MML
bpa00430 Taurine and hypotaurine metabolism SBML MML
bpa00450 Selenoamino acid metabolism SBML MML
bpa00460 (Undocumented) SBML MML
bpa00471 D-Glutamine and D-glutamate metabolism SBML MML
bpa00472 D-Arginine and D-ornithine metabolism SBML MML
bpa00473 D-Alanine metabolism SBML MML
bpa00480 Glutathione metabolism SBML MML
bpa00500 Starch and sucrose metabolism SBML MML
bpa00520 Amino sugar and nucleotide sugar metabolism SBML MML
bpa00521 Streptomycin biosynthesis SBML MML
bpa00523 Polyketide sugar unit biosynthesis SBML MML
bpa00530 (Undocumented) SBML MML
bpa00540 Lipopolysaccharide biosynthesis SBML MML
bpa00550 Peptidoglycan biosynthesis SBML MML
bpa00561 Glycerolipid metabolism SBML MML
bpa00562 Inositol phosphate metabolism SBML MML
bpa00564 Glycerophospholipid metabolism SBML MML
bpa00565 Ether lipid metabolism SBML MML
bpa00590 Arachidonic acid metabolism SBML MML
bpa00592 alpha-Linolenic acid metabolism SBML MML
bpa00620 Pyruvate metabolism SBML MML
bpa00623 2,4-Dichlorobenzoate degradation SBML MML
bpa00624 1- and 2-Methylnaphthalene degradation SBML MML
bpa00626 Naphthalene and anthracene degradation SBML MML
bpa00627 1,4-Dichlorobenzene degradation SBML MML
bpa00628 Fluorene degradation SBML MML
bpa00630 Glyoxylate and dicarboxylate metabolism SBML MML
bpa00631 1,2-Dichloroethane degradation SBML MML
bpa00632 (Undocumented) SBML MML
bpa00633 Trinitrotoluene degradation SBML MML
bpa00640 Propanoate metabolism SBML MML
bpa00641 3-Chloroacrylic acid degradation SBML MML
bpa00643 Styrene degradation SBML MML
bpa00650 Butanoate metabolism SBML MML
bpa00660 C5-Branched dibasic acid metabolism SBML MML
bpa00670 One carbon pool by folate SBML MML
bpa00680 Methane metabolism SBML MML
bpa00710 (Undocumented) SBML MML
bpa00720 (Undocumented) SBML MML
bpa00730 Thiamine metabolism SBML MML
bpa00740 Riboflavin metabolism SBML MML
bpa00750 Vitamin B6 metabolism SBML MML
bpa00760 Nicotinate and nicotinamide metabolism SBML MML
bpa00770 Pantothenate and CoA biosynthesis SBML MML
bpa00780 Biotin metabolism SBML MML
bpa00785 Lipoic acid metabolism SBML MML
bpa00790 Folate biosynthesis SBML MML
bpa00860 Porphyrin and chlorophyll metabolism SBML MML
bpa00900 Terpenoid backbone biosynthesis SBML MML
bpa00903 (Undocumented) SBML MML
bpa00910 Nitrogen metabolism SBML MML
bpa00920 Sulfur metabolism SBML MML
bpa00930 Caprolactam degradation SBML MML
bpa00940 (Undocumented) SBML MML
bpa00950 (Undocumented) SBML MML
bpa00970 Aminoacyl-tRNA biosynthesis SBML MML
bpa00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bpa00982 (Undocumented) SBML MML
bpa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.