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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bpd: Burkholderia pseudomallei 668

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bpd00010 Glycolysis / Gluconeogenesis SBML MML
bpd00020 Citrate cycle (TCA cycle) SBML MML
bpd00030 Pentose phosphate pathway SBML MML
bpd00031 (Undocumented) SBML MML
bpd00040 Pentose and glucuronate interconversions SBML MML
bpd00051 Fructose and mannose metabolism SBML MML
bpd00052 Galactose metabolism SBML MML
bpd00053 Ascorbate and aldarate metabolism SBML MML
bpd00061 Fatty acid biosynthesis SBML MML
bpd00062 Fatty acid elongation in mitochondria SBML MML
bpd00071 Fatty acid metabolism SBML MML
bpd00072 Synthesis and degradation of ketone bodies SBML MML
bpd00100 (Undocumented) SBML MML
bpd00120 (Undocumented) SBML MML
bpd00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bpd00150 Androgen and estrogen metabolism SBML MML
bpd00220 (Undocumented) SBML MML
bpd00230 Purine metabolism SBML MML
bpd00240 Pyrimidine metabolism SBML MML
bpd00251 (Undocumented) SBML MML
bpd00252 (Undocumented) SBML MML
bpd00260 Glycine, serine and threonine metabolism SBML MML
bpd00271 (Undocumented) SBML MML
bpd00272 (Undocumented) SBML MML
bpd00280 Valine, leucine and isoleucine degradation SBML MML
bpd00281 Geraniol degradation SBML MML
bpd00290 Valine, leucine and isoleucine biosynthesis SBML MML
bpd00300 Lysine biosynthesis SBML MML
bpd00310 Lysine degradation SBML MML
bpd00311 Penicillin and cephalosporin biosynthesis SBML MML
bpd00330 Arginine and proline metabolism SBML MML
bpd00340 Histidine metabolism SBML MML
bpd00350 Tyrosine metabolism SBML MML
bpd00360 Phenylalanine metabolism SBML MML
bpd00361 gamma-Hexachlorocyclohexane degradation SBML MML
bpd00362 (Undocumented) SBML MML
bpd00363 Bisphenol A degradation SBML MML
bpd00364 Fluorobenzoate degradation SBML MML
bpd00380 Tryptophan metabolism SBML MML
bpd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bpd00401 Novobiocin biosynthesis SBML MML
bpd00410 beta-Alanine metabolism SBML MML
bpd00430 Taurine and hypotaurine metabolism SBML MML
bpd00440 Phosphonate and phosphinate metabolism SBML MML
bpd00450 Selenoamino acid metabolism SBML MML
bpd00460 (Undocumented) SBML MML
bpd00471 D-Glutamine and D-glutamate metabolism SBML MML
bpd00472 D-Arginine and D-ornithine metabolism SBML MML
bpd00473 D-Alanine metabolism SBML MML
bpd00480 Glutathione metabolism SBML MML
bpd00500 Starch and sucrose metabolism SBML MML
bpd00520 Amino sugar and nucleotide sugar metabolism SBML MML
bpd00521 Streptomycin biosynthesis SBML MML
bpd00523 Polyketide sugar unit biosynthesis SBML MML
bpd00530 (Undocumented) SBML MML
bpd00540 Lipopolysaccharide biosynthesis SBML MML
bpd00550 Peptidoglycan biosynthesis SBML MML
bpd00561 Glycerolipid metabolism SBML MML
bpd00562 Inositol phosphate metabolism SBML MML
bpd00564 Glycerophospholipid metabolism SBML MML
bpd00565 Ether lipid metabolism SBML MML
bpd00590 Arachidonic acid metabolism SBML MML
bpd00592 alpha-Linolenic acid metabolism SBML MML
bpd00600 Sphingolipid metabolism SBML MML
bpd00620 Pyruvate metabolism SBML MML
bpd00622 Toluene and xylene degradation SBML MML
bpd00623 2,4-Dichlorobenzoate degradation SBML MML
bpd00624 1- and 2-Methylnaphthalene degradation SBML MML
bpd00626 Naphthalene and anthracene degradation SBML MML
bpd00627 1,4-Dichlorobenzene degradation SBML MML
bpd00628 Fluorene degradation SBML MML
bpd00629 Carbazole degradation SBML MML
bpd00630 Glyoxylate and dicarboxylate metabolism SBML MML
bpd00631 1,2-Dichloroethane degradation SBML MML
bpd00632 (Undocumented) SBML MML
bpd00633 Trinitrotoluene degradation SBML MML
bpd00640 Propanoate metabolism SBML MML
bpd00641 3-Chloroacrylic acid degradation SBML MML
bpd00642 Ethylbenzene degradation SBML MML
bpd00643 Styrene degradation SBML MML
bpd00650 Butanoate metabolism SBML MML
bpd00660 C5-Branched dibasic acid metabolism SBML MML
bpd00670 One carbon pool by folate SBML MML
bpd00680 Methane metabolism SBML MML
bpd00710 (Undocumented) SBML MML
bpd00720 (Undocumented) SBML MML
bpd00730 Thiamine metabolism SBML MML
bpd00740 Riboflavin metabolism SBML MML
bpd00750 Vitamin B6 metabolism SBML MML
bpd00760 Nicotinate and nicotinamide metabolism SBML MML
bpd00770 Pantothenate and CoA biosynthesis SBML MML
bpd00780 Biotin metabolism SBML MML
bpd00785 Lipoic acid metabolism SBML MML
bpd00790 Folate biosynthesis SBML MML
bpd00791 Atrazine degradation SBML MML
bpd00860 Porphyrin and chlorophyll metabolism SBML MML
bpd00900 Terpenoid backbone biosynthesis SBML MML
bpd00903 (Undocumented) SBML MML
bpd00910 Nitrogen metabolism SBML MML
bpd00920 Sulfur metabolism SBML MML
bpd00930 Caprolactam degradation SBML MML
bpd00940 (Undocumented) SBML MML
bpd00941 (Undocumented) SBML MML
bpd00950 (Undocumented) SBML MML
bpd00960 (Undocumented) SBML MML
bpd00970 Aminoacyl-tRNA biosynthesis SBML MML
bpd00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bpd00982 (Undocumented) SBML MML
bpd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.