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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bwe: Bacillus weihenstephanensis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bwe00010 Glycolysis / Gluconeogenesis SBML MML
bwe00020 Citrate cycle (TCA cycle) SBML MML
bwe00030 Pentose phosphate pathway SBML MML
bwe00031 (Undocumented) SBML MML
bwe00040 Pentose and glucuronate interconversions SBML MML
bwe00051 Fructose and mannose metabolism SBML MML
bwe00052 Galactose metabolism SBML MML
bwe00053 Ascorbate and aldarate metabolism SBML MML
bwe00061 Fatty acid biosynthesis SBML MML
bwe00062 Fatty acid elongation in mitochondria SBML MML
bwe00071 Fatty acid metabolism SBML MML
bwe00072 Synthesis and degradation of ketone bodies SBML MML
bwe00100 (Undocumented) SBML MML
bwe00120 (Undocumented) SBML MML
bwe00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bwe00150 Androgen and estrogen metabolism SBML MML
bwe00220 (Undocumented) SBML MML
bwe00230 Purine metabolism SBML MML
bwe00240 Pyrimidine metabolism SBML MML
bwe00251 (Undocumented) SBML MML
bwe00252 (Undocumented) SBML MML
bwe00260 Glycine, serine and threonine metabolism SBML MML
bwe00271 (Undocumented) SBML MML
bwe00272 (Undocumented) SBML MML
bwe00280 Valine, leucine and isoleucine degradation SBML MML
bwe00281 Geraniol degradation SBML MML
bwe00290 Valine, leucine and isoleucine biosynthesis SBML MML
bwe00300 Lysine biosynthesis SBML MML
bwe00310 Lysine degradation SBML MML
bwe00311 Penicillin and cephalosporin biosynthesis SBML MML
bwe00330 Arginine and proline metabolism SBML MML
bwe00340 Histidine metabolism SBML MML
bwe00350 Tyrosine metabolism SBML MML
bwe00360 Phenylalanine metabolism SBML MML
bwe00361 gamma-Hexachlorocyclohexane degradation SBML MML
bwe00362 (Undocumented) SBML MML
bwe00363 Bisphenol A degradation SBML MML
bwe00380 Tryptophan metabolism SBML MML
bwe00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bwe00401 Novobiocin biosynthesis SBML MML
bwe00410 beta-Alanine metabolism SBML MML
bwe00430 Taurine and hypotaurine metabolism SBML MML
bwe00440 Phosphonate and phosphinate metabolism SBML MML
bwe00450 Selenoamino acid metabolism SBML MML
bwe00460 (Undocumented) SBML MML
bwe00471 D-Glutamine and D-glutamate metabolism SBML MML
bwe00472 D-Arginine and D-ornithine metabolism SBML MML
bwe00473 D-Alanine metabolism SBML MML
bwe00480 Glutathione metabolism SBML MML
bwe00500 Starch and sucrose metabolism SBML MML
bwe00510 (Undocumented) SBML MML
bwe00520 Amino sugar and nucleotide sugar metabolism SBML MML
bwe00521 Streptomycin biosynthesis SBML MML
bwe00523 Polyketide sugar unit biosynthesis SBML MML
bwe00530 (Undocumented) SBML MML
bwe00550 Peptidoglycan biosynthesis SBML MML
bwe00561 Glycerolipid metabolism SBML MML
bwe00562 Inositol phosphate metabolism SBML MML
bwe00564 Glycerophospholipid metabolism SBML MML
bwe00565 Ether lipid metabolism SBML MML
bwe00590 Arachidonic acid metabolism SBML MML
bwe00592 alpha-Linolenic acid metabolism SBML MML
bwe00620 Pyruvate metabolism SBML MML
bwe00622 Toluene and xylene degradation SBML MML
bwe00624 1- and 2-Methylnaphthalene degradation SBML MML
bwe00626 Naphthalene and anthracene degradation SBML MML
bwe00627 1,4-Dichlorobenzene degradation SBML MML
bwe00630 Glyoxylate and dicarboxylate metabolism SBML MML
bwe00631 1,2-Dichloroethane degradation SBML MML
bwe00632 (Undocumented) SBML MML
bwe00640 Propanoate metabolism SBML MML
bwe00641 3-Chloroacrylic acid degradation SBML MML
bwe00642 Ethylbenzene degradation SBML MML
bwe00643 Styrene degradation SBML MML
bwe00650 Butanoate metabolism SBML MML
bwe00660 C5-Branched dibasic acid metabolism SBML MML
bwe00670 One carbon pool by folate SBML MML
bwe00680 Methane metabolism SBML MML
bwe00710 (Undocumented) SBML MML
bwe00720 (Undocumented) SBML MML
bwe00730 Thiamine metabolism SBML MML
bwe00740 Riboflavin metabolism SBML MML
bwe00750 Vitamin B6 metabolism SBML MML
bwe00760 Nicotinate and nicotinamide metabolism SBML MML
bwe00770 Pantothenate and CoA biosynthesis SBML MML
bwe00780 Biotin metabolism SBML MML
bwe00785 Lipoic acid metabolism SBML MML
bwe00790 Folate biosynthesis SBML MML
bwe00860 Porphyrin and chlorophyll metabolism SBML MML
bwe00900 Terpenoid backbone biosynthesis SBML MML
bwe00903 (Undocumented) SBML MML
bwe00910 Nitrogen metabolism SBML MML
bwe00920 Sulfur metabolism SBML MML
bwe00930 Caprolactam degradation SBML MML
bwe00940 (Undocumented) SBML MML
bwe00960 (Undocumented) SBML MML
bwe00970 Aminoacyl-tRNA biosynthesis SBML MML
bwe00982 (Undocumented) SBML MML
bwe00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.