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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cab: Chlamydophila abortus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cab00010 Glycolysis / Gluconeogenesis SBML MML
cab00020 Citrate cycle (TCA cycle) SBML MML
cab00030 Pentose phosphate pathway SBML MML
cab00051 Fructose and mannose metabolism SBML MML
cab00061 Fatty acid biosynthesis SBML MML
cab00100 (Undocumented) SBML MML
cab00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cab00230 Purine metabolism SBML MML
cab00240 Pyrimidine metabolism SBML MML
cab00251 (Undocumented) SBML MML
cab00252 (Undocumented) SBML MML
cab00260 Glycine, serine and threonine metabolism SBML MML
cab00271 (Undocumented) SBML MML
cab00272 (Undocumented) SBML MML
cab00280 Valine, leucine and isoleucine degradation SBML MML
cab00290 Valine, leucine and isoleucine biosynthesis SBML MML
cab00300 Lysine biosynthesis SBML MML
cab00310 Lysine degradation SBML MML
cab00330 Arginine and proline metabolism SBML MML
cab00340 Histidine metabolism SBML MML
cab00350 Tyrosine metabolism SBML MML
cab00380 Tryptophan metabolism SBML MML
cab00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cab00450 Selenoamino acid metabolism SBML MML
cab00471 D-Glutamine and D-glutamate metabolism SBML MML
cab00500 Starch and sucrose metabolism SBML MML
cab00530 (Undocumented) SBML MML
cab00540 Lipopolysaccharide biosynthesis SBML MML
cab00550 Peptidoglycan biosynthesis SBML MML
cab00561 Glycerolipid metabolism SBML MML
cab00564 Glycerophospholipid metabolism SBML MML
cab00620 Pyruvate metabolism SBML MML
cab00630 Glyoxylate and dicarboxylate metabolism SBML MML
cab00632 (Undocumented) SBML MML
cab00640 Propanoate metabolism SBML MML
cab00650 Butanoate metabolism SBML MML
cab00670 One carbon pool by folate SBML MML
cab00710 (Undocumented) SBML MML
cab00720 (Undocumented) SBML MML
cab00730 Thiamine metabolism SBML MML
cab00740 Riboflavin metabolism SBML MML
cab00760 Nicotinate and nicotinamide metabolism SBML MML
cab00770 Pantothenate and CoA biosynthesis SBML MML
cab00780 Biotin metabolism SBML MML
cab00785 Lipoic acid metabolism SBML MML
cab00790 Folate biosynthesis SBML MML
cab00860 Porphyrin and chlorophyll metabolism SBML MML
cab00900 Terpenoid backbone biosynthesis SBML MML
cab00920 Sulfur metabolism SBML MML
cab00970 Aminoacyl-tRNA biosynthesis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.