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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cac: Clostridium acetobutylicum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cac00010 Glycolysis / Gluconeogenesis SBML MML
cac00020 Citrate cycle (TCA cycle) SBML MML
cac00030 Pentose phosphate pathway SBML MML
cac00040 Pentose and glucuronate interconversions SBML MML
cac00051 Fructose and mannose metabolism SBML MML
cac00052 Galactose metabolism SBML MML
cac00061 Fatty acid biosynthesis SBML MML
cac00071 Fatty acid metabolism SBML MML
cac00072 Synthesis and degradation of ketone bodies SBML MML
cac00100 (Undocumented) SBML MML
cac00120 (Undocumented) SBML MML
cac00220 (Undocumented) SBML MML
cac00230 Purine metabolism SBML MML
cac00240 Pyrimidine metabolism SBML MML
cac00251 (Undocumented) SBML MML
cac00252 (Undocumented) SBML MML
cac00260 Glycine, serine and threonine metabolism SBML MML
cac00271 (Undocumented) SBML MML
cac00272 (Undocumented) SBML MML
cac00280 Valine, leucine and isoleucine degradation SBML MML
cac00290 Valine, leucine and isoleucine biosynthesis SBML MML
cac00300 Lysine biosynthesis SBML MML
cac00310 Lysine degradation SBML MML
cac00330 Arginine and proline metabolism SBML MML
cac00340 Histidine metabolism SBML MML
cac00350 Tyrosine metabolism SBML MML
cac00360 Phenylalanine metabolism SBML MML
cac00361 gamma-Hexachlorocyclohexane degradation SBML MML
cac00363 Bisphenol A degradation SBML MML
cac00380 Tryptophan metabolism SBML MML
cac00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cac00401 Novobiocin biosynthesis SBML MML
cac00410 beta-Alanine metabolism SBML MML
cac00430 Taurine and hypotaurine metabolism SBML MML
cac00450 Selenoamino acid metabolism SBML MML
cac00460 (Undocumented) SBML MML
cac00471 D-Glutamine and D-glutamate metabolism SBML MML
cac00472 D-Arginine and D-ornithine metabolism SBML MML
cac00473 D-Alanine metabolism SBML MML
cac00480 Glutathione metabolism SBML MML
cac00500 Starch and sucrose metabolism SBML MML
cac00520 Amino sugar and nucleotide sugar metabolism SBML MML
cac00521 Streptomycin biosynthesis SBML MML
cac00523 Polyketide sugar unit biosynthesis SBML MML
cac00530 (Undocumented) SBML MML
cac00550 Peptidoglycan biosynthesis SBML MML
cac00561 Glycerolipid metabolism SBML MML
cac00564 Glycerophospholipid metabolism SBML MML
cac00590 Arachidonic acid metabolism SBML MML
cac00620 Pyruvate metabolism SBML MML
cac00624 1- and 2-Methylnaphthalene degradation SBML MML
cac00625 (Undocumented) SBML MML
cac00626 Naphthalene and anthracene degradation SBML MML
cac00630 Glyoxylate and dicarboxylate metabolism SBML MML
cac00632 (Undocumented) SBML MML
cac00640 Propanoate metabolism SBML MML
cac00641 3-Chloroacrylic acid degradation SBML MML
cac00650 Butanoate metabolism SBML MML
cac00660 C5-Branched dibasic acid metabolism SBML MML
cac00670 One carbon pool by folate SBML MML
cac00680 Methane metabolism SBML MML
cac00710 (Undocumented) SBML MML
cac00720 (Undocumented) SBML MML
cac00730 Thiamine metabolism SBML MML
cac00740 Riboflavin metabolism SBML MML
cac00750 Vitamin B6 metabolism SBML MML
cac00760 Nicotinate and nicotinamide metabolism SBML MML
cac00770 Pantothenate and CoA biosynthesis SBML MML
cac00780 Biotin metabolism SBML MML
cac00790 Folate biosynthesis SBML MML
cac00860 Porphyrin and chlorophyll metabolism SBML MML
cac00900 Terpenoid backbone biosynthesis SBML MML
cac00903 (Undocumented) SBML MML
cac00910 Nitrogen metabolism SBML MML
cac00920 Sulfur metabolism SBML MML
cac00970 Aminoacyl-tRNA biosynthesis SBML MML
cac00982 (Undocumented) SBML MML
cac00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.