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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cbs: Coxiella burnetii RSA 331

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cbs00010 Glycolysis / Gluconeogenesis SBML MML
cbs00020 Citrate cycle (TCA cycle) SBML MML
cbs00030 Pentose phosphate pathway SBML MML
cbs00040 Pentose and glucuronate interconversions SBML MML
cbs00051 Fructose and mannose metabolism SBML MML
cbs00052 Galactose metabolism SBML MML
cbs00061 Fatty acid biosynthesis SBML MML
cbs00062 Fatty acid elongation in mitochondria SBML MML
cbs00071 Fatty acid metabolism SBML MML
cbs00072 Synthesis and degradation of ketone bodies SBML MML
cbs00100 (Undocumented) SBML MML
cbs00120 (Undocumented) SBML MML
cbs00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cbs00220 (Undocumented) SBML MML
cbs00230 Purine metabolism SBML MML
cbs00240 Pyrimidine metabolism SBML MML
cbs00251 (Undocumented) SBML MML
cbs00252 (Undocumented) SBML MML
cbs00260 Glycine, serine and threonine metabolism SBML MML
cbs00271 (Undocumented) SBML MML
cbs00272 (Undocumented) SBML MML
cbs00280 Valine, leucine and isoleucine degradation SBML MML
cbs00281 Geraniol degradation SBML MML
cbs00290 Valine, leucine and isoleucine biosynthesis SBML MML
cbs00300 Lysine biosynthesis SBML MML
cbs00310 Lysine degradation SBML MML
cbs00330 Arginine and proline metabolism SBML MML
cbs00340 Histidine metabolism SBML MML
cbs00350 Tyrosine metabolism SBML MML
cbs00360 Phenylalanine metabolism SBML MML
cbs00361 gamma-Hexachlorocyclohexane degradation SBML MML
cbs00380 Tryptophan metabolism SBML MML
cbs00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cbs00410 beta-Alanine metabolism SBML MML
cbs00450 Selenoamino acid metabolism SBML MML
cbs00471 D-Glutamine and D-glutamate metabolism SBML MML
cbs00473 D-Alanine metabolism SBML MML
cbs00480 Glutathione metabolism SBML MML
cbs00500 Starch and sucrose metabolism SBML MML
cbs00520 Amino sugar and nucleotide sugar metabolism SBML MML
cbs00521 Streptomycin biosynthesis SBML MML
cbs00523 Polyketide sugar unit biosynthesis SBML MML
cbs00530 (Undocumented) SBML MML
cbs00540 Lipopolysaccharide biosynthesis SBML MML
cbs00550 Peptidoglycan biosynthesis SBML MML
cbs00561 Glycerolipid metabolism SBML MML
cbs00562 Inositol phosphate metabolism SBML MML
cbs00564 Glycerophospholipid metabolism SBML MML
cbs00565 Ether lipid metabolism SBML MML
cbs00592 alpha-Linolenic acid metabolism SBML MML
cbs00620 Pyruvate metabolism SBML MML
cbs00624 1- and 2-Methylnaphthalene degradation SBML MML
cbs00626 Naphthalene and anthracene degradation SBML MML
cbs00630 Glyoxylate and dicarboxylate metabolism SBML MML
cbs00632 (Undocumented) SBML MML
cbs00640 Propanoate metabolism SBML MML
cbs00641 3-Chloroacrylic acid degradation SBML MML
cbs00642 Ethylbenzene degradation SBML MML
cbs00650 Butanoate metabolism SBML MML
cbs00670 One carbon pool by folate SBML MML
cbs00680 Methane metabolism SBML MML
cbs00710 (Undocumented) SBML MML
cbs00720 (Undocumented) SBML MML
cbs00730 Thiamine metabolism SBML MML
cbs00740 Riboflavin metabolism SBML MML
cbs00750 Vitamin B6 metabolism SBML MML
cbs00760 Nicotinate and nicotinamide metabolism SBML MML
cbs00770 Pantothenate and CoA biosynthesis SBML MML
cbs00780 Biotin metabolism SBML MML
cbs00785 Lipoic acid metabolism SBML MML
cbs00790 Folate biosynthesis SBML MML
cbs00791 Atrazine degradation SBML MML
cbs00860 Porphyrin and chlorophyll metabolism SBML MML
cbs00900 Terpenoid backbone biosynthesis SBML MML
cbs00903 (Undocumented) SBML MML
cbs00910 Nitrogen metabolism SBML MML
cbs00920 Sulfur metabolism SBML MML
cbs00930 Caprolactam degradation SBML MML
cbs00960 (Undocumented) SBML MML
cbs00970 Aminoacyl-tRNA biosynthesis SBML MML
cbs00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.