This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cdf: Clostridium difficile

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cdf00010 Glycolysis / Gluconeogenesis SBML MML
cdf00020 Citrate cycle (TCA cycle) SBML MML
cdf00030 Pentose phosphate pathway SBML MML
cdf00040 Pentose and glucuronate interconversions SBML MML
cdf00051 Fructose and mannose metabolism SBML MML
cdf00052 Galactose metabolism SBML MML
cdf00053 Ascorbate and aldarate metabolism SBML MML
cdf00061 Fatty acid biosynthesis SBML MML
cdf00071 Fatty acid metabolism SBML MML
cdf00072 Synthesis and degradation of ketone bodies SBML MML
cdf00100 (Undocumented) SBML MML
cdf00120 (Undocumented) SBML MML
cdf00220 (Undocumented) SBML MML
cdf00230 Purine metabolism SBML MML
cdf00240 Pyrimidine metabolism SBML MML
cdf00251 (Undocumented) SBML MML
cdf00252 (Undocumented) SBML MML
cdf00260 Glycine, serine and threonine metabolism SBML MML
cdf00271 (Undocumented) SBML MML
cdf00272 (Undocumented) SBML MML
cdf00280 Valine, leucine and isoleucine degradation SBML MML
cdf00290 Valine, leucine and isoleucine biosynthesis SBML MML
cdf00300 Lysine biosynthesis SBML MML
cdf00310 Lysine degradation SBML MML
cdf00330 Arginine and proline metabolism SBML MML
cdf00340 Histidine metabolism SBML MML
cdf00350 Tyrosine metabolism SBML MML
cdf00360 Phenylalanine metabolism SBML MML
cdf00362 (Undocumented) SBML MML
cdf00380 Tryptophan metabolism SBML MML
cdf00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cdf00401 Novobiocin biosynthesis SBML MML
cdf00410 beta-Alanine metabolism SBML MML
cdf00430 Taurine and hypotaurine metabolism SBML MML
cdf00440 Phosphonate and phosphinate metabolism SBML MML
cdf00450 Selenoamino acid metabolism SBML MML
cdf00460 (Undocumented) SBML MML
cdf00471 D-Glutamine and D-glutamate metabolism SBML MML
cdf00473 D-Alanine metabolism SBML MML
cdf00480 Glutathione metabolism SBML MML
cdf00500 Starch and sucrose metabolism SBML MML
cdf00520 Amino sugar and nucleotide sugar metabolism SBML MML
cdf00521 Streptomycin biosynthesis SBML MML
cdf00530 (Undocumented) SBML MML
cdf00550 Peptidoglycan biosynthesis SBML MML
cdf00561 Glycerolipid metabolism SBML MML
cdf00564 Glycerophospholipid metabolism SBML MML
cdf00620 Pyruvate metabolism SBML MML
cdf00624 1- and 2-Methylnaphthalene degradation SBML MML
cdf00630 Glyoxylate and dicarboxylate metabolism SBML MML
cdf00632 (Undocumented) SBML MML
cdf00640 Propanoate metabolism SBML MML
cdf00641 3-Chloroacrylic acid degradation SBML MML
cdf00650 Butanoate metabolism SBML MML
cdf00670 One carbon pool by folate SBML MML
cdf00680 Methane metabolism SBML MML
cdf00710 (Undocumented) SBML MML
cdf00720 (Undocumented) SBML MML
cdf00730 Thiamine metabolism SBML MML
cdf00740 Riboflavin metabolism SBML MML
cdf00750 Vitamin B6 metabolism SBML MML
cdf00760 Nicotinate and nicotinamide metabolism SBML MML
cdf00770 Pantothenate and CoA biosynthesis SBML MML
cdf00780 Biotin metabolism SBML MML
cdf00785 Lipoic acid metabolism SBML MML
cdf00790 Folate biosynthesis SBML MML
cdf00860 Porphyrin and chlorophyll metabolism SBML MML
cdf00900 Terpenoid backbone biosynthesis SBML MML
cdf00903 (Undocumented) SBML MML
cdf00910 Nitrogen metabolism SBML MML
cdf00920 Sulfur metabolism SBML MML
cdf00960 (Undocumented) SBML MML
cdf00970 Aminoacyl-tRNA biosynthesis SBML MML
cdf00982 (Undocumented) SBML MML
cdf00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.