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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism det: Dehalococcoides ethenogenes

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
det00010 Glycolysis / Gluconeogenesis SBML MML
det00020 Citrate cycle (TCA cycle) SBML MML
det00030 Pentose phosphate pathway SBML MML
det00040 Pentose and glucuronate interconversions SBML MML
det00051 Fructose and mannose metabolism SBML MML
det00052 Galactose metabolism SBML MML
det00061 Fatty acid biosynthesis SBML MML
det00100 (Undocumented) SBML MML
det00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
det00220 (Undocumented) SBML MML
det00230 Purine metabolism SBML MML
det00240 Pyrimidine metabolism SBML MML
det00251 (Undocumented) SBML MML
det00252 (Undocumented) SBML MML
det00260 Glycine, serine and threonine metabolism SBML MML
det00271 (Undocumented) SBML MML
det00272 (Undocumented) SBML MML
det00280 Valine, leucine and isoleucine degradation SBML MML
det00281 Geraniol degradation SBML MML
det00290 Valine, leucine and isoleucine biosynthesis SBML MML
det00300 Lysine biosynthesis SBML MML
det00330 Arginine and proline metabolism SBML MML
det00340 Histidine metabolism SBML MML
det00350 Tyrosine metabolism SBML MML
det00360 Phenylalanine metabolism SBML MML
det00380 Tryptophan metabolism SBML MML
det00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
det00401 Novobiocin biosynthesis SBML MML
det00410 beta-Alanine metabolism SBML MML
det00450 Selenoamino acid metabolism SBML MML
det00520 Amino sugar and nucleotide sugar metabolism SBML MML
det00521 Streptomycin biosynthesis SBML MML
det00550 Peptidoglycan biosynthesis SBML MML
det00564 Glycerophospholipid metabolism SBML MML
det00620 Pyruvate metabolism SBML MML
det00624 1- and 2-Methylnaphthalene degradation SBML MML
det00626 Naphthalene and anthracene degradation SBML MML
det00630 Glyoxylate and dicarboxylate metabolism SBML MML
det00640 Propanoate metabolism SBML MML
det00650 Butanoate metabolism SBML MML
det00670 One carbon pool by folate SBML MML
det00680 Methane metabolism SBML MML
det00710 (Undocumented) SBML MML
det00720 (Undocumented) SBML MML
det00730 Thiamine metabolism SBML MML
det00740 Riboflavin metabolism SBML MML
det00750 Vitamin B6 metabolism SBML MML
det00760 Nicotinate and nicotinamide metabolism SBML MML
det00770 Pantothenate and CoA biosynthesis SBML MML
det00780 Biotin metabolism SBML MML
det00790 Folate biosynthesis SBML MML
det00860 Porphyrin and chlorophyll metabolism SBML MML
det00900 Terpenoid backbone biosynthesis SBML MML
det00910 Nitrogen metabolism SBML MML
det00920 Sulfur metabolism SBML MML
det00970 Aminoacyl-tRNA biosynthesis SBML MML
det00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.