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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dptm: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dptm00010 Glycolysis / Gluconeogenesis SBML MML
dptm00020 Citrate cycle (TCA cycle) SBML MML
dptm00030 Pentose phosphate pathway SBML MML
dptm00031 (Undocumented) SBML MML
dptm00040 Pentose and glucuronate interconversions SBML MML
dptm00051 Fructose and mannose metabolism SBML MML
dptm00052 Galactose metabolism SBML MML
dptm00053 Ascorbate and aldarate metabolism SBML MML
dptm00061 Fatty acid biosynthesis SBML MML
dptm00062 Fatty acid elongation in mitochondria SBML MML
dptm00071 Fatty acid metabolism SBML MML
dptm00072 Synthesis and degradation of ketone bodies SBML MML
dptm00100 (Undocumented) SBML MML
dptm00120 (Undocumented) SBML MML
dptm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dptm00140 (Undocumented) SBML MML
dptm00150 Androgen and estrogen metabolism SBML MML
dptm00220 (Undocumented) SBML MML
dptm00230 Purine metabolism SBML MML
dptm00232 Caffeine metabolism SBML MML
dptm00240 Pyrimidine metabolism SBML MML
dptm00251 (Undocumented) SBML MML
dptm00252 (Undocumented) SBML MML
dptm00260 Glycine, serine and threonine metabolism SBML MML
dptm00271 (Undocumented) SBML MML
dptm00272 (Undocumented) SBML MML
dptm00280 Valine, leucine and isoleucine degradation SBML MML
dptm00281 Geraniol degradation SBML MML
dptm00290 Valine, leucine and isoleucine biosynthesis SBML MML
dptm00300 Lysine biosynthesis SBML MML
dptm00310 Lysine degradation SBML MML
dptm00311 Penicillin and cephalosporin biosynthesis SBML MML
dptm00330 Arginine and proline metabolism SBML MML
dptm00340 Histidine metabolism SBML MML
dptm00350 Tyrosine metabolism SBML MML
dptm00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
dptm00360 Phenylalanine metabolism SBML MML
dptm00361 gamma-Hexachlorocyclohexane degradation SBML MML
dptm00362 (Undocumented) SBML MML
dptm00363 Bisphenol A degradation SBML MML
dptm00364 Fluorobenzoate degradation SBML MML
dptm00380 Tryptophan metabolism SBML MML
dptm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dptm00401 Novobiocin biosynthesis SBML MML
dptm00410 beta-Alanine metabolism SBML MML
dptm00430 Taurine and hypotaurine metabolism SBML MML
dptm00440 Phosphonate and phosphinate metabolism SBML MML
dptm00450 Selenoamino acid metabolism SBML MML
dptm00460 (Undocumented) SBML MML
dptm00471 D-Glutamine and D-glutamate metabolism SBML MML
dptm00472 D-Arginine and D-ornithine metabolism SBML MML
dptm00473 D-Alanine metabolism SBML MML
dptm00480 Glutathione metabolism SBML MML
dptm00500 Starch and sucrose metabolism SBML MML
dptm00510 (Undocumented) SBML MML
dptm00520 Amino sugar and nucleotide sugar metabolism SBML MML
dptm00521 Streptomycin biosynthesis SBML MML
dptm00530 (Undocumented) SBML MML
dptm00540 Lipopolysaccharide biosynthesis SBML MML
dptm00550 Peptidoglycan biosynthesis SBML MML
dptm00561 Glycerolipid metabolism SBML MML
dptm00562 Inositol phosphate metabolism SBML MML
dptm00564 Glycerophospholipid metabolism SBML MML
dptm00565 Ether lipid metabolism SBML MML
dptm00590 Arachidonic acid metabolism SBML MML
dptm00591 Linoleic acid metabolism SBML MML
dptm00592 alpha-Linolenic acid metabolism SBML MML
dptm00600 Sphingolipid metabolism SBML MML
dptm00620 Pyruvate metabolism SBML MML
dptm00622 Toluene and xylene degradation SBML MML
dptm00624 1- and 2-Methylnaphthalene degradation SBML MML
dptm00625 (Undocumented) SBML MML
dptm00626 Naphthalene and anthracene degradation SBML MML
dptm00627 1,4-Dichlorobenzene degradation SBML MML
dptm00628 Fluorene degradation SBML MML
dptm00630 Glyoxylate and dicarboxylate metabolism SBML MML
dptm00632 (Undocumented) SBML MML
dptm00633 Trinitrotoluene degradation SBML MML
dptm00640 Propanoate metabolism SBML MML
dptm00641 3-Chloroacrylic acid degradation SBML MML
dptm00642 Ethylbenzene degradation SBML MML
dptm00643 Styrene degradation SBML MML
dptm00650 Butanoate metabolism SBML MML
dptm00660 C5-Branched dibasic acid metabolism SBML MML
dptm00670 One carbon pool by folate SBML MML
dptm00680 Methane metabolism SBML MML
dptm00710 (Undocumented) SBML MML
dptm00720 (Undocumented) SBML MML
dptm00730 Thiamine metabolism SBML MML
dptm00740 Riboflavin metabolism SBML MML
dptm00750 Vitamin B6 metabolism SBML MML
dptm00760 Nicotinate and nicotinamide metabolism SBML MML
dptm00770 Pantothenate and CoA biosynthesis SBML MML
dptm00780 Biotin metabolism SBML MML
dptm00790 Folate biosynthesis SBML MML
dptm00791 Atrazine degradation SBML MML
dptm00860 Porphyrin and chlorophyll metabolism SBML MML
dptm00900 Terpenoid backbone biosynthesis SBML MML
dptm00901 (Undocumented) SBML MML
dptm00902 Monoterpenoid biosynthesis SBML MML
dptm00903 (Undocumented) SBML MML
dptm00910 Nitrogen metabolism SBML MML
dptm00920 Sulfur metabolism SBML MML
dptm00930 Caprolactam degradation SBML MML
dptm00940 (Undocumented) SBML MML
dptm00941 (Undocumented) SBML MML
dptm00950 (Undocumented) SBML MML
dptm00960 (Undocumented) SBML MML
dptm00970 Aminoacyl-tRNA biosynthesis SBML MML
dptm00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
dptm00982 (Undocumented) SBML MML
dptm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.