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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dvvi: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dvvi00010 Glycolysis / Gluconeogenesis SBML MML
dvvi00020 Citrate cycle (TCA cycle) SBML MML
dvvi00030 Pentose phosphate pathway SBML MML
dvvi00031 (Undocumented) SBML MML
dvvi00040 Pentose and glucuronate interconversions SBML MML
dvvi00051 Fructose and mannose metabolism SBML MML
dvvi00052 Galactose metabolism SBML MML
dvvi00053 Ascorbate and aldarate metabolism SBML MML
dvvi00061 Fatty acid biosynthesis SBML MML
dvvi00062 Fatty acid elongation in mitochondria SBML MML
dvvi00071 Fatty acid metabolism SBML MML
dvvi00072 Synthesis and degradation of ketone bodies SBML MML
dvvi00100 (Undocumented) SBML MML
dvvi00120 (Undocumented) SBML MML
dvvi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dvvi00140 (Undocumented) SBML MML
dvvi00150 Androgen and estrogen metabolism SBML MML
dvvi00220 (Undocumented) SBML MML
dvvi00230 Purine metabolism SBML MML
dvvi00240 Pyrimidine metabolism SBML MML
dvvi00251 (Undocumented) SBML MML
dvvi00252 (Undocumented) SBML MML
dvvi00260 Glycine, serine and threonine metabolism SBML MML
dvvi00271 (Undocumented) SBML MML
dvvi00272 (Undocumented) SBML MML
dvvi00280 Valine, leucine and isoleucine degradation SBML MML
dvvi00281 Geraniol degradation SBML MML
dvvi00290 Valine, leucine and isoleucine biosynthesis SBML MML
dvvi00300 Lysine biosynthesis SBML MML
dvvi00310 Lysine degradation SBML MML
dvvi00330 Arginine and proline metabolism SBML MML
dvvi00340 Histidine metabolism SBML MML
dvvi00350 Tyrosine metabolism SBML MML
dvvi00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
dvvi00360 Phenylalanine metabolism SBML MML
dvvi00361 gamma-Hexachlorocyclohexane degradation SBML MML
dvvi00362 (Undocumented) SBML MML
dvvi00363 Bisphenol A degradation SBML MML
dvvi00364 Fluorobenzoate degradation SBML MML
dvvi00380 Tryptophan metabolism SBML MML
dvvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dvvi00401 Novobiocin biosynthesis SBML MML
dvvi00410 beta-Alanine metabolism SBML MML
dvvi00430 Taurine and hypotaurine metabolism SBML MML
dvvi00440 Phosphonate and phosphinate metabolism SBML MML
dvvi00450 Selenoamino acid metabolism SBML MML
dvvi00460 (Undocumented) SBML MML
dvvi00471 D-Glutamine and D-glutamate metabolism SBML MML
dvvi00480 Glutathione metabolism SBML MML
dvvi00500 Starch and sucrose metabolism SBML MML
dvvi00510 (Undocumented) SBML MML
dvvi00520 Amino sugar and nucleotide sugar metabolism SBML MML
dvvi00521 Streptomycin biosynthesis SBML MML
dvvi00530 (Undocumented) SBML MML
dvvi00540 Lipopolysaccharide biosynthesis SBML MML
dvvi00550 Peptidoglycan biosynthesis SBML MML
dvvi00561 Glycerolipid metabolism SBML MML
dvvi00562 Inositol phosphate metabolism SBML MML
dvvi00564 Glycerophospholipid metabolism SBML MML
dvvi00565 Ether lipid metabolism SBML MML
dvvi00590 Arachidonic acid metabolism SBML MML
dvvi00591 Linoleic acid metabolism SBML MML
dvvi00592 alpha-Linolenic acid metabolism SBML MML
dvvi00600 Sphingolipid metabolism SBML MML
dvvi00620 Pyruvate metabolism SBML MML
dvvi00622 Toluene and xylene degradation SBML MML
dvvi00624 1- and 2-Methylnaphthalene degradation SBML MML
dvvi00626 Naphthalene and anthracene degradation SBML MML
dvvi00627 1,4-Dichlorobenzene degradation SBML MML
dvvi00628 Fluorene degradation SBML MML
dvvi00630 Glyoxylate and dicarboxylate metabolism SBML MML
dvvi00632 (Undocumented) SBML MML
dvvi00640 Propanoate metabolism SBML MML
dvvi00641 3-Chloroacrylic acid degradation SBML MML
dvvi00643 Styrene degradation SBML MML
dvvi00650 Butanoate metabolism SBML MML
dvvi00670 One carbon pool by folate SBML MML
dvvi00680 Methane metabolism SBML MML
dvvi00710 (Undocumented) SBML MML
dvvi00720 (Undocumented) SBML MML
dvvi00730 Thiamine metabolism SBML MML
dvvi00740 Riboflavin metabolism SBML MML
dvvi00750 Vitamin B6 metabolism SBML MML
dvvi00760 Nicotinate and nicotinamide metabolism SBML MML
dvvi00770 Pantothenate and CoA biosynthesis SBML MML
dvvi00780 Biotin metabolism SBML MML
dvvi00790 Folate biosynthesis SBML MML
dvvi00860 Porphyrin and chlorophyll metabolism SBML MML
dvvi00900 Terpenoid backbone biosynthesis SBML MML
dvvi00902 Monoterpenoid biosynthesis SBML MML
dvvi00903 (Undocumented) SBML MML
dvvi00904 (Undocumented) SBML MML
dvvi00906 Carotenoid biosynthesis SBML MML
dvvi00908 (Undocumented) SBML MML
dvvi00910 Nitrogen metabolism SBML MML
dvvi00920 Sulfur metabolism SBML MML
dvvi00930 Caprolactam degradation SBML MML
dvvi00940 (Undocumented) SBML MML
dvvi00941 (Undocumented) SBML MML
dvvi00944 (Undocumented) SBML MML
dvvi00950 (Undocumented) SBML MML
dvvi00960 (Undocumented) SBML MML
dvvi00970 Aminoacyl-tRNA biosynthesis SBML MML
dvvi00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
dvvi00982 (Undocumented) SBML MML
dvvi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.