This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ecv: Escherichia coli APEC O1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ecv00010 Glycolysis / Gluconeogenesis SBML MML
ecv00020 Citrate cycle (TCA cycle) SBML MML
ecv00030 Pentose phosphate pathway SBML MML
ecv00040 Pentose and glucuronate interconversions SBML MML
ecv00051 Fructose and mannose metabolism SBML MML
ecv00052 Galactose metabolism SBML MML
ecv00053 Ascorbate and aldarate metabolism SBML MML
ecv00061 Fatty acid biosynthesis SBML MML
ecv00062 Fatty acid elongation in mitochondria SBML MML
ecv00071 Fatty acid metabolism SBML MML
ecv00100 (Undocumented) SBML MML
ecv00120 (Undocumented) SBML MML
ecv00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ecv00220 (Undocumented) SBML MML
ecv00230 Purine metabolism SBML MML
ecv00240 Pyrimidine metabolism SBML MML
ecv00251 (Undocumented) SBML MML
ecv00252 (Undocumented) SBML MML
ecv00260 Glycine, serine and threonine metabolism SBML MML
ecv00271 (Undocumented) SBML MML
ecv00272 (Undocumented) SBML MML
ecv00280 Valine, leucine and isoleucine degradation SBML MML
ecv00281 Geraniol degradation SBML MML
ecv00290 Valine, leucine and isoleucine biosynthesis SBML MML
ecv00300 Lysine biosynthesis SBML MML
ecv00310 Lysine degradation SBML MML
ecv00330 Arginine and proline metabolism SBML MML
ecv00340 Histidine metabolism SBML MML
ecv00350 Tyrosine metabolism SBML MML
ecv00360 Phenylalanine metabolism SBML MML
ecv00361 gamma-Hexachlorocyclohexane degradation SBML MML
ecv00364 Fluorobenzoate degradation SBML MML
ecv00380 Tryptophan metabolism SBML MML
ecv00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ecv00401 Novobiocin biosynthesis SBML MML
ecv00410 beta-Alanine metabolism SBML MML
ecv00430 Taurine and hypotaurine metabolism SBML MML
ecv00450 Selenoamino acid metabolism SBML MML
ecv00460 (Undocumented) SBML MML
ecv00471 D-Glutamine and D-glutamate metabolism SBML MML
ecv00473 D-Alanine metabolism SBML MML
ecv00480 Glutathione metabolism SBML MML
ecv00500 Starch and sucrose metabolism SBML MML
ecv00520 Amino sugar and nucleotide sugar metabolism SBML MML
ecv00521 Streptomycin biosynthesis SBML MML
ecv00523 Polyketide sugar unit biosynthesis SBML MML
ecv00530 (Undocumented) SBML MML
ecv00540 Lipopolysaccharide biosynthesis SBML MML
ecv00550 Peptidoglycan biosynthesis SBML MML
ecv00561 Glycerolipid metabolism SBML MML
ecv00562 Inositol phosphate metabolism SBML MML
ecv00564 Glycerophospholipid metabolism SBML MML
ecv00590 Arachidonic acid metabolism SBML MML
ecv00592 alpha-Linolenic acid metabolism SBML MML
ecv00600 Sphingolipid metabolism SBML MML
ecv00620 Pyruvate metabolism SBML MML
ecv00624 1- and 2-Methylnaphthalene degradation SBML MML
ecv00627 1,4-Dichlorobenzene degradation SBML MML
ecv00630 Glyoxylate and dicarboxylate metabolism SBML MML
ecv00632 (Undocumented) SBML MML
ecv00633 Trinitrotoluene degradation SBML MML
ecv00640 Propanoate metabolism SBML MML
ecv00641 3-Chloroacrylic acid degradation SBML MML
ecv00650 Butanoate metabolism SBML MML
ecv00660 C5-Branched dibasic acid metabolism SBML MML
ecv00670 One carbon pool by folate SBML MML
ecv00680 Methane metabolism SBML MML
ecv00710 (Undocumented) SBML MML
ecv00720 (Undocumented) SBML MML
ecv00730 Thiamine metabolism SBML MML
ecv00740 Riboflavin metabolism SBML MML
ecv00750 Vitamin B6 metabolism SBML MML
ecv00760 Nicotinate and nicotinamide metabolism SBML MML
ecv00770 Pantothenate and CoA biosynthesis SBML MML
ecv00780 Biotin metabolism SBML MML
ecv00785 Lipoic acid metabolism SBML MML
ecv00790 Folate biosynthesis SBML MML
ecv00791 Atrazine degradation SBML MML
ecv00860 Porphyrin and chlorophyll metabolism SBML MML
ecv00900 Terpenoid backbone biosynthesis SBML MML
ecv00903 (Undocumented) SBML MML
ecv00910 Nitrogen metabolism SBML MML
ecv00920 Sulfur metabolism SBML MML
ecv00930 Caprolactam degradation SBML MML
ecv00950 (Undocumented) SBML MML
ecv00960 (Undocumented) SBML MML
ecv00970 Aminoacyl-tRNA biosynthesis SBML MML
ecv00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ecv00982 (Undocumented) SBML MML
ecv00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.