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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism epsi: Picea sitchensis (sitka spruce) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
epsi00010 Glycolysis / Gluconeogenesis SBML MML
epsi00020 Citrate cycle (TCA cycle) SBML MML
epsi00030 Pentose phosphate pathway SBML MML
epsi00031 (Undocumented) SBML MML
epsi00040 Pentose and glucuronate interconversions SBML MML
epsi00051 Fructose and mannose metabolism SBML MML
epsi00052 Galactose metabolism SBML MML
epsi00053 Ascorbate and aldarate metabolism SBML MML
epsi00061 Fatty acid biosynthesis SBML MML
epsi00071 Fatty acid metabolism SBML MML
epsi00072 Synthesis and degradation of ketone bodies SBML MML
epsi00100 (Undocumented) SBML MML
epsi00120 (Undocumented) SBML MML
epsi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
epsi00140 (Undocumented) SBML MML
epsi00150 Androgen and estrogen metabolism SBML MML
epsi00220 (Undocumented) SBML MML
epsi00230 Purine metabolism SBML MML
epsi00232 Caffeine metabolism SBML MML
epsi00240 Pyrimidine metabolism SBML MML
epsi00251 (Undocumented) SBML MML
epsi00252 (Undocumented) SBML MML
epsi00260 Glycine, serine and threonine metabolism SBML MML
epsi00271 (Undocumented) SBML MML
epsi00272 (Undocumented) SBML MML
epsi00280 Valine, leucine and isoleucine degradation SBML MML
epsi00281 Geraniol degradation SBML MML
epsi00290 Valine, leucine and isoleucine biosynthesis SBML MML
epsi00300 Lysine biosynthesis SBML MML
epsi00310 Lysine degradation SBML MML
epsi00330 Arginine and proline metabolism SBML MML
epsi00340 Histidine metabolism SBML MML
epsi00350 Tyrosine metabolism SBML MML
epsi00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
epsi00360 Phenylalanine metabolism SBML MML
epsi00361 gamma-Hexachlorocyclohexane degradation SBML MML
epsi00362 (Undocumented) SBML MML
epsi00363 Bisphenol A degradation SBML MML
epsi00380 Tryptophan metabolism SBML MML
epsi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
epsi00401 Novobiocin biosynthesis SBML MML
epsi00410 beta-Alanine metabolism SBML MML
epsi00430 Taurine and hypotaurine metabolism SBML MML
epsi00440 Phosphonate and phosphinate metabolism SBML MML
epsi00450 Selenoamino acid metabolism SBML MML
epsi00460 (Undocumented) SBML MML
epsi00480 Glutathione metabolism SBML MML
epsi00500 Starch and sucrose metabolism SBML MML
epsi00510 (Undocumented) SBML MML
epsi00520 Amino sugar and nucleotide sugar metabolism SBML MML
epsi00521 Streptomycin biosynthesis SBML MML
epsi00530 (Undocumented) SBML MML
epsi00540 Lipopolysaccharide biosynthesis SBML MML
epsi00550 Peptidoglycan biosynthesis SBML MML
epsi00561 Glycerolipid metabolism SBML MML
epsi00562 Inositol phosphate metabolism SBML MML
epsi00564 Glycerophospholipid metabolism SBML MML
epsi00565 Ether lipid metabolism SBML MML
epsi00590 Arachidonic acid metabolism SBML MML
epsi00591 Linoleic acid metabolism SBML MML
epsi00592 alpha-Linolenic acid metabolism SBML MML
epsi00600 Sphingolipid metabolism SBML MML
epsi00620 Pyruvate metabolism SBML MML
epsi00622 Toluene and xylene degradation SBML MML
epsi00623 2,4-Dichlorobenzoate degradation SBML MML
epsi00624 1- and 2-Methylnaphthalene degradation SBML MML
epsi00625 (Undocumented) SBML MML
epsi00626 Naphthalene and anthracene degradation SBML MML
epsi00627 1,4-Dichlorobenzene degradation SBML MML
epsi00628 Fluorene degradation SBML MML
epsi00630 Glyoxylate and dicarboxylate metabolism SBML MML
epsi00632 (Undocumented) SBML MML
epsi00640 Propanoate metabolism SBML MML
epsi00641 3-Chloroacrylic acid degradation SBML MML
epsi00642 Ethylbenzene degradation SBML MML
epsi00643 Styrene degradation SBML MML
epsi00650 Butanoate metabolism SBML MML
epsi00660 C5-Branched dibasic acid metabolism SBML MML
epsi00670 One carbon pool by folate SBML MML
epsi00680 Methane metabolism SBML MML
epsi00710 (Undocumented) SBML MML
epsi00720 (Undocumented) SBML MML
epsi00730 Thiamine metabolism SBML MML
epsi00740 Riboflavin metabolism SBML MML
epsi00750 Vitamin B6 metabolism SBML MML
epsi00760 Nicotinate and nicotinamide metabolism SBML MML
epsi00770 Pantothenate and CoA biosynthesis SBML MML
epsi00780 Biotin metabolism SBML MML
epsi00790 Folate biosynthesis SBML MML
epsi00860 Porphyrin and chlorophyll metabolism SBML MML
epsi00900 Terpenoid backbone biosynthesis SBML MML
epsi00901 (Undocumented) SBML MML
epsi00902 Monoterpenoid biosynthesis SBML MML
epsi00903 (Undocumented) SBML MML
epsi00904 (Undocumented) SBML MML
epsi00906 Carotenoid biosynthesis SBML MML
epsi00908 (Undocumented) SBML MML
epsi00910 Nitrogen metabolism SBML MML
epsi00920 Sulfur metabolism SBML MML
epsi00930 Caprolactam degradation SBML MML
epsi00940 (Undocumented) SBML MML
epsi00941 (Undocumented) SBML MML
epsi00944 (Undocumented) SBML MML
epsi00950 (Undocumented) SBML MML
epsi00960 (Undocumented) SBML MML
epsi00970 Aminoacyl-tRNA biosynthesis SBML MML
epsi00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
epsi00982 (Undocumented) SBML MML
epsi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.