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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism epta: Pinus taeda (loblolly pine) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
epta00010 Glycolysis / Gluconeogenesis SBML MML
epta00020 Citrate cycle (TCA cycle) SBML MML
epta00030 Pentose phosphate pathway SBML MML
epta00031 (Undocumented) SBML MML
epta00040 Pentose and glucuronate interconversions SBML MML
epta00051 Fructose and mannose metabolism SBML MML
epta00052 Galactose metabolism SBML MML
epta00053 Ascorbate and aldarate metabolism SBML MML
epta00061 Fatty acid biosynthesis SBML MML
epta00062 Fatty acid elongation in mitochondria SBML MML
epta00071 Fatty acid metabolism SBML MML
epta00072 Synthesis and degradation of ketone bodies SBML MML
epta00100 (Undocumented) SBML MML
epta00120 (Undocumented) SBML MML
epta00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
epta00140 (Undocumented) SBML MML
epta00150 Androgen and estrogen metabolism SBML MML
epta00220 (Undocumented) SBML MML
epta00230 Purine metabolism SBML MML
epta00232 Caffeine metabolism SBML MML
epta00240 Pyrimidine metabolism SBML MML
epta00251 (Undocumented) SBML MML
epta00252 (Undocumented) SBML MML
epta00260 Glycine, serine and threonine metabolism SBML MML
epta00271 (Undocumented) SBML MML
epta00272 (Undocumented) SBML MML
epta00280 Valine, leucine and isoleucine degradation SBML MML
epta00281 Geraniol degradation SBML MML
epta00290 Valine, leucine and isoleucine biosynthesis SBML MML
epta00300 Lysine biosynthesis SBML MML
epta00310 Lysine degradation SBML MML
epta00311 Penicillin and cephalosporin biosynthesis SBML MML
epta00330 Arginine and proline metabolism SBML MML
epta00340 Histidine metabolism SBML MML
epta00350 Tyrosine metabolism SBML MML
epta00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
epta00360 Phenylalanine metabolism SBML MML
epta00361 gamma-Hexachlorocyclohexane degradation SBML MML
epta00362 (Undocumented) SBML MML
epta00363 Bisphenol A degradation SBML MML
epta00364 Fluorobenzoate degradation SBML MML
epta00380 Tryptophan metabolism SBML MML
epta00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
epta00401 Novobiocin biosynthesis SBML MML
epta00410 beta-Alanine metabolism SBML MML
epta00430 Taurine and hypotaurine metabolism SBML MML
epta00440 Phosphonate and phosphinate metabolism SBML MML
epta00450 Selenoamino acid metabolism SBML MML
epta00460 (Undocumented) SBML MML
epta00471 D-Glutamine and D-glutamate metabolism SBML MML
epta00480 Glutathione metabolism SBML MML
epta00500 Starch and sucrose metabolism SBML MML
epta00510 (Undocumented) SBML MML
epta00520 Amino sugar and nucleotide sugar metabolism SBML MML
epta00521 Streptomycin biosynthesis SBML MML
epta00530 (Undocumented) SBML MML
epta00540 Lipopolysaccharide biosynthesis SBML MML
epta00550 Peptidoglycan biosynthesis SBML MML
epta00561 Glycerolipid metabolism SBML MML
epta00562 Inositol phosphate metabolism SBML MML
epta00564 Glycerophospholipid metabolism SBML MML
epta00565 Ether lipid metabolism SBML MML
epta00590 Arachidonic acid metabolism SBML MML
epta00591 Linoleic acid metabolism SBML MML
epta00592 alpha-Linolenic acid metabolism SBML MML
epta00600 Sphingolipid metabolism SBML MML
epta00620 Pyruvate metabolism SBML MML
epta00622 Toluene and xylene degradation SBML MML
epta00624 1- and 2-Methylnaphthalene degradation SBML MML
epta00625 (Undocumented) SBML MML
epta00626 Naphthalene and anthracene degradation SBML MML
epta00627 1,4-Dichlorobenzene degradation SBML MML
epta00628 Fluorene degradation SBML MML
epta00630 Glyoxylate and dicarboxylate metabolism SBML MML
epta00632 (Undocumented) SBML MML
epta00640 Propanoate metabolism SBML MML
epta00641 3-Chloroacrylic acid degradation SBML MML
epta00642 Ethylbenzene degradation SBML MML
epta00643 Styrene degradation SBML MML
epta00650 Butanoate metabolism SBML MML
epta00660 C5-Branched dibasic acid metabolism SBML MML
epta00670 One carbon pool by folate SBML MML
epta00680 Methane metabolism SBML MML
epta00710 (Undocumented) SBML MML
epta00720 (Undocumented) SBML MML
epta00730 Thiamine metabolism SBML MML
epta00740 Riboflavin metabolism SBML MML
epta00750 Vitamin B6 metabolism SBML MML
epta00760 Nicotinate and nicotinamide metabolism SBML MML
epta00770 Pantothenate and CoA biosynthesis SBML MML
epta00780 Biotin metabolism SBML MML
epta00790 Folate biosynthesis SBML MML
epta00791 Atrazine degradation SBML MML
epta00860 Porphyrin and chlorophyll metabolism SBML MML
epta00900 Terpenoid backbone biosynthesis SBML MML
epta00901 (Undocumented) SBML MML
epta00902 Monoterpenoid biosynthesis SBML MML
epta00903 (Undocumented) SBML MML
epta00904 (Undocumented) SBML MML
epta00906 Carotenoid biosynthesis SBML MML
epta00908 (Undocumented) SBML MML
epta00910 Nitrogen metabolism SBML MML
epta00920 Sulfur metabolism SBML MML
epta00930 Caprolactam degradation SBML MML
epta00940 (Undocumented) SBML MML
epta00941 (Undocumented) SBML MML
epta00944 (Undocumented) SBML MML
epta00950 (Undocumented) SBML MML
epta00960 (Undocumented) SBML MML
epta00970 Aminoacyl-tRNA biosynthesis SBML MML
epta00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
epta00982 (Undocumented) SBML MML
epta00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.