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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism hdu: Haemophilus ducreyi

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
hdu00010 Glycolysis / Gluconeogenesis SBML MML
hdu00020 Citrate cycle (TCA cycle) SBML MML
hdu00030 Pentose phosphate pathway SBML MML
hdu00040 Pentose and glucuronate interconversions SBML MML
hdu00051 Fructose and mannose metabolism SBML MML
hdu00052 Galactose metabolism SBML MML
hdu00053 Ascorbate and aldarate metabolism SBML MML
hdu00061 Fatty acid biosynthesis SBML MML
hdu00100 (Undocumented) SBML MML
hdu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
hdu00220 (Undocumented) SBML MML
hdu00230 Purine metabolism SBML MML
hdu00240 Pyrimidine metabolism SBML MML
hdu00251 (Undocumented) SBML MML
hdu00252 (Undocumented) SBML MML
hdu00260 Glycine, serine and threonine metabolism SBML MML
hdu00271 (Undocumented) SBML MML
hdu00272 (Undocumented) SBML MML
hdu00280 Valine, leucine and isoleucine degradation SBML MML
hdu00290 Valine, leucine and isoleucine biosynthesis SBML MML
hdu00300 Lysine biosynthesis SBML MML
hdu00310 Lysine degradation SBML MML
hdu00330 Arginine and proline metabolism SBML MML
hdu00340 Histidine metabolism SBML MML
hdu00350 Tyrosine metabolism SBML MML
hdu00380 Tryptophan metabolism SBML MML
hdu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
hdu00430 Taurine and hypotaurine metabolism SBML MML
hdu00450 Selenoamino acid metabolism SBML MML
hdu00460 (Undocumented) SBML MML
hdu00471 D-Glutamine and D-glutamate metabolism SBML MML
hdu00473 D-Alanine metabolism SBML MML
hdu00480 Glutathione metabolism SBML MML
hdu00500 Starch and sucrose metabolism SBML MML
hdu00520 Amino sugar and nucleotide sugar metabolism SBML MML
hdu00521 Streptomycin biosynthesis SBML MML
hdu00523 Polyketide sugar unit biosynthesis SBML MML
hdu00530 (Undocumented) SBML MML
hdu00540 Lipopolysaccharide biosynthesis SBML MML
hdu00550 Peptidoglycan biosynthesis SBML MML
hdu00561 Glycerolipid metabolism SBML MML
hdu00562 Inositol phosphate metabolism SBML MML
hdu00564 Glycerophospholipid metabolism SBML MML
hdu00620 Pyruvate metabolism SBML MML
hdu00630 Glyoxylate and dicarboxylate metabolism SBML MML
hdu00632 (Undocumented) SBML MML
hdu00640 Propanoate metabolism SBML MML
hdu00650 Butanoate metabolism SBML MML
hdu00670 One carbon pool by folate SBML MML
hdu00710 (Undocumented) SBML MML
hdu00720 (Undocumented) SBML MML
hdu00730 Thiamine metabolism SBML MML
hdu00740 Riboflavin metabolism SBML MML
hdu00750 Vitamin B6 metabolism SBML MML
hdu00760 Nicotinate and nicotinamide metabolism SBML MML
hdu00770 Pantothenate and CoA biosynthesis SBML MML
hdu00780 Biotin metabolism SBML MML
hdu00785 Lipoic acid metabolism SBML MML
hdu00790 Folate biosynthesis SBML MML
hdu00860 Porphyrin and chlorophyll metabolism SBML MML
hdu00900 Terpenoid backbone biosynthesis SBML MML
hdu00910 Nitrogen metabolism SBML MML
hdu00920 Sulfur metabolism SBML MML
hdu00940 (Undocumented) SBML MML
hdu00950 (Undocumented) SBML MML
hdu00970 Aminoacyl-tRNA biosynthesis SBML MML
hdu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.