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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism lac: Lactobacillus acidophilus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
lac00010 Glycolysis / Gluconeogenesis SBML MML
lac00020 Citrate cycle (TCA cycle) SBML MML
lac00030 Pentose phosphate pathway SBML MML
lac00040 Pentose and glucuronate interconversions SBML MML
lac00051 Fructose and mannose metabolism SBML MML
lac00052 Galactose metabolism SBML MML
lac00061 Fatty acid biosynthesis SBML MML
lac00071 Fatty acid metabolism SBML MML
lac00072 Synthesis and degradation of ketone bodies SBML MML
lac00100 (Undocumented) SBML MML
lac00120 (Undocumented) SBML MML
lac00220 (Undocumented) SBML MML
lac00230 Purine metabolism SBML MML
lac00240 Pyrimidine metabolism SBML MML
lac00251 (Undocumented) SBML MML
lac00252 (Undocumented) SBML MML
lac00260 Glycine, serine and threonine metabolism SBML MML
lac00271 (Undocumented) SBML MML
lac00272 (Undocumented) SBML MML
lac00280 Valine, leucine and isoleucine degradation SBML MML
lac00290 Valine, leucine and isoleucine biosynthesis SBML MML
lac00300 Lysine biosynthesis SBML MML
lac00310 Lysine degradation SBML MML
lac00330 Arginine and proline metabolism SBML MML
lac00340 Histidine metabolism SBML MML
lac00350 Tyrosine metabolism SBML MML
lac00380 Tryptophan metabolism SBML MML
lac00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
lac00430 Taurine and hypotaurine metabolism SBML MML
lac00450 Selenoamino acid metabolism SBML MML
lac00460 (Undocumented) SBML MML
lac00471 D-Glutamine and D-glutamate metabolism SBML MML
lac00473 D-Alanine metabolism SBML MML
lac00480 Glutathione metabolism SBML MML
lac00500 Starch and sucrose metabolism SBML MML
lac00520 Amino sugar and nucleotide sugar metabolism SBML MML
lac00521 Streptomycin biosynthesis SBML MML
lac00530 (Undocumented) SBML MML
lac00550 Peptidoglycan biosynthesis SBML MML
lac00561 Glycerolipid metabolism SBML MML
lac00564 Glycerophospholipid metabolism SBML MML
lac00600 Sphingolipid metabolism SBML MML
lac00620 Pyruvate metabolism SBML MML
lac00624 1- and 2-Methylnaphthalene degradation SBML MML
lac00630 Glyoxylate and dicarboxylate metabolism SBML MML
lac00632 (Undocumented) SBML MML
lac00640 Propanoate metabolism SBML MML
lac00641 3-Chloroacrylic acid degradation SBML MML
lac00650 Butanoate metabolism SBML MML
lac00670 One carbon pool by folate SBML MML
lac00680 Methane metabolism SBML MML
lac00710 (Undocumented) SBML MML
lac00720 (Undocumented) SBML MML
lac00730 Thiamine metabolism SBML MML
lac00740 Riboflavin metabolism SBML MML
lac00750 Vitamin B6 metabolism SBML MML
lac00760 Nicotinate and nicotinamide metabolism SBML MML
lac00770 Pantothenate and CoA biosynthesis SBML MML
lac00790 Folate biosynthesis SBML MML
lac00900 Terpenoid backbone biosynthesis SBML MML
lac00910 Nitrogen metabolism SBML MML
lac00920 Sulfur metabolism SBML MML
lac00960 (Undocumented) SBML MML
lac00970 Aminoacyl-tRNA biosynthesis SBML MML
lac00982 (Undocumented) SBML MML
lac00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.