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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mma: Methanosarcina mazei

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mma00010 Glycolysis / Gluconeogenesis SBML MML
mma00020 Citrate cycle (TCA cycle) SBML MML
mma00030 Pentose phosphate pathway SBML MML
mma00031 (Undocumented) SBML MML
mma00040 Pentose and glucuronate interconversions SBML MML
mma00051 Fructose and mannose metabolism SBML MML
mma00052 Galactose metabolism SBML MML
mma00053 Ascorbate and aldarate metabolism SBML MML
mma00061 Fatty acid biosynthesis SBML MML
mma00071 Fatty acid metabolism SBML MML
mma00100 (Undocumented) SBML MML
mma00120 (Undocumented) SBML MML
mma00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mma00150 Androgen and estrogen metabolism SBML MML
mma00220 (Undocumented) SBML MML
mma00230 Purine metabolism SBML MML
mma00240 Pyrimidine metabolism SBML MML
mma00251 (Undocumented) SBML MML
mma00252 (Undocumented) SBML MML
mma00260 Glycine, serine and threonine metabolism SBML MML
mma00271 (Undocumented) SBML MML
mma00272 (Undocumented) SBML MML
mma00280 Valine, leucine and isoleucine degradation SBML MML
mma00281 Geraniol degradation SBML MML
mma00290 Valine, leucine and isoleucine biosynthesis SBML MML
mma00300 Lysine biosynthesis SBML MML
mma00310 Lysine degradation SBML MML
mma00330 Arginine and proline metabolism SBML MML
mma00340 Histidine metabolism SBML MML
mma00350 Tyrosine metabolism SBML MML
mma00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
mma00360 Phenylalanine metabolism SBML MML
mma00361 gamma-Hexachlorocyclohexane degradation SBML MML
mma00362 (Undocumented) SBML MML
mma00363 Bisphenol A degradation SBML MML
mma00380 Tryptophan metabolism SBML MML
mma00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mma00401 Novobiocin biosynthesis SBML MML
mma00410 beta-Alanine metabolism SBML MML
mma00430 Taurine and hypotaurine metabolism SBML MML
mma00440 Phosphonate and phosphinate metabolism SBML MML
mma00450 Selenoamino acid metabolism SBML MML
mma00460 (Undocumented) SBML MML
mma00480 Glutathione metabolism SBML MML
mma00500 Starch and sucrose metabolism SBML MML
mma00510 (Undocumented) SBML MML
mma00520 Amino sugar and nucleotide sugar metabolism SBML MML
mma00521 Streptomycin biosynthesis SBML MML
mma00523 Polyketide sugar unit biosynthesis SBML MML
mma00530 (Undocumented) SBML MML
mma00550 Peptidoglycan biosynthesis SBML MML
mma00561 Glycerolipid metabolism SBML MML
mma00562 Inositol phosphate metabolism SBML MML
mma00564 Glycerophospholipid metabolism SBML MML
mma00592 alpha-Linolenic acid metabolism SBML MML
mma00620 Pyruvate metabolism SBML MML
mma00624 1- and 2-Methylnaphthalene degradation SBML MML
mma00625 (Undocumented) SBML MML
mma00626 Naphthalene and anthracene degradation SBML MML
mma00630 Glyoxylate and dicarboxylate metabolism SBML MML
mma00632 (Undocumented) SBML MML
mma00640 Propanoate metabolism SBML MML
mma00641 3-Chloroacrylic acid degradation SBML MML
mma00642 Ethylbenzene degradation SBML MML
mma00650 Butanoate metabolism SBML MML
mma00660 C5-Branched dibasic acid metabolism SBML MML
mma00670 One carbon pool by folate SBML MML
mma00680 Methane metabolism SBML MML
mma00710 (Undocumented) SBML MML
mma00720 (Undocumented) SBML MML
mma00730 Thiamine metabolism SBML MML
mma00740 Riboflavin metabolism SBML MML
mma00750 Vitamin B6 metabolism SBML MML
mma00760 Nicotinate and nicotinamide metabolism SBML MML
mma00770 Pantothenate and CoA biosynthesis SBML MML
mma00780 Biotin metabolism SBML MML
mma00790 Folate biosynthesis SBML MML
mma00860 Porphyrin and chlorophyll metabolism SBML MML
mma00900 Terpenoid backbone biosynthesis SBML MML
mma00903 (Undocumented) SBML MML
mma00910 Nitrogen metabolism SBML MML
mma00920 Sulfur metabolism SBML MML
mma00930 Caprolactam degradation SBML MML
mma00940 (Undocumented) SBML MML
mma00950 (Undocumented) SBML MML
mma00960 (Undocumented) SBML MML
mma00970 Aminoacyl-tRNA biosynthesis SBML MML
mma00982 (Undocumented) SBML MML
mma00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.