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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mth: Methanobacterium thermoautotrophicum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mth00010 Glycolysis / Gluconeogenesis SBML MML
mth00020 Citrate cycle (TCA cycle) SBML MML
mth00030 Pentose phosphate pathway SBML MML
mth00040 Pentose and glucuronate interconversions SBML MML
mth00051 Fructose and mannose metabolism SBML MML
mth00052 Galactose metabolism SBML MML
mth00061 Fatty acid biosynthesis SBML MML
mth00071 Fatty acid metabolism SBML MML
mth00100 (Undocumented) SBML MML
mth00120 (Undocumented) SBML MML
mth00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mth00220 (Undocumented) SBML MML
mth00230 Purine metabolism SBML MML
mth00240 Pyrimidine metabolism SBML MML
mth00251 (Undocumented) SBML MML
mth00252 (Undocumented) SBML MML
mth00260 Glycine, serine and threonine metabolism SBML MML
mth00271 (Undocumented) SBML MML
mth00272 (Undocumented) SBML MML
mth00280 Valine, leucine and isoleucine degradation SBML MML
mth00281 Geraniol degradation SBML MML
mth00290 Valine, leucine and isoleucine biosynthesis SBML MML
mth00300 Lysine biosynthesis SBML MML
mth00330 Arginine and proline metabolism SBML MML
mth00340 Histidine metabolism SBML MML
mth00350 Tyrosine metabolism SBML MML
mth00360 Phenylalanine metabolism SBML MML
mth00362 (Undocumented) SBML MML
mth00380 Tryptophan metabolism SBML MML
mth00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mth00401 Novobiocin biosynthesis SBML MML
mth00450 Selenoamino acid metabolism SBML MML
mth00460 (Undocumented) SBML MML
mth00500 Starch and sucrose metabolism SBML MML
mth00510 (Undocumented) SBML MML
mth00520 Amino sugar and nucleotide sugar metabolism SBML MML
mth00521 Streptomycin biosynthesis SBML MML
mth00523 Polyketide sugar unit biosynthesis SBML MML
mth00530 (Undocumented) SBML MML
mth00550 Peptidoglycan biosynthesis SBML MML
mth00562 Inositol phosphate metabolism SBML MML
mth00564 Glycerophospholipid metabolism SBML MML
mth00592 alpha-Linolenic acid metabolism SBML MML
mth00620 Pyruvate metabolism SBML MML
mth00624 1- and 2-Methylnaphthalene degradation SBML MML
mth00625 (Undocumented) SBML MML
mth00628 Fluorene degradation SBML MML
mth00630 Glyoxylate and dicarboxylate metabolism SBML MML
mth00632 (Undocumented) SBML MML
mth00640 Propanoate metabolism SBML MML
mth00650 Butanoate metabolism SBML MML
mth00660 C5-Branched dibasic acid metabolism SBML MML
mth00670 One carbon pool by folate SBML MML
mth00680 Methane metabolism SBML MML
mth00710 (Undocumented) SBML MML
mth00720 (Undocumented) SBML MML
mth00730 Thiamine metabolism SBML MML
mth00740 Riboflavin metabolism SBML MML
mth00750 Vitamin B6 metabolism SBML MML
mth00760 Nicotinate and nicotinamide metabolism SBML MML
mth00770 Pantothenate and CoA biosynthesis SBML MML
mth00780 Biotin metabolism SBML MML
mth00790 Folate biosynthesis SBML MML
mth00860 Porphyrin and chlorophyll metabolism SBML MML
mth00900 Terpenoid backbone biosynthesis SBML MML
mth00906 Carotenoid biosynthesis SBML MML
mth00910 Nitrogen metabolism SBML MML
mth00940 (Undocumented) SBML MML
mth00950 (Undocumented) SBML MML
mth00970 Aminoacyl-tRNA biosynthesis SBML MML
mth00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.