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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism noc: Nitrosococcus oceani

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
noc00010 Glycolysis / Gluconeogenesis SBML MML
noc00020 Citrate cycle (TCA cycle) SBML MML
noc00030 Pentose phosphate pathway SBML MML
noc00031 (Undocumented) SBML MML
noc00040 Pentose and glucuronate interconversions SBML MML
noc00051 Fructose and mannose metabolism SBML MML
noc00052 Galactose metabolism SBML MML
noc00053 Ascorbate and aldarate metabolism SBML MML
noc00061 Fatty acid biosynthesis SBML MML
noc00062 Fatty acid elongation in mitochondria SBML MML
noc00071 Fatty acid metabolism SBML MML
noc00072 Synthesis and degradation of ketone bodies SBML MML
noc00100 (Undocumented) SBML MML
noc00120 (Undocumented) SBML MML
noc00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
noc00220 (Undocumented) SBML MML
noc00230 Purine metabolism SBML MML
noc00240 Pyrimidine metabolism SBML MML
noc00251 (Undocumented) SBML MML
noc00252 (Undocumented) SBML MML
noc00260 Glycine, serine and threonine metabolism SBML MML
noc00271 (Undocumented) SBML MML
noc00272 (Undocumented) SBML MML
noc00280 Valine, leucine and isoleucine degradation SBML MML
noc00281 Geraniol degradation SBML MML
noc00290 Valine, leucine and isoleucine biosynthesis SBML MML
noc00300 Lysine biosynthesis SBML MML
noc00310 Lysine degradation SBML MML
noc00330 Arginine and proline metabolism SBML MML
noc00340 Histidine metabolism SBML MML
noc00350 Tyrosine metabolism SBML MML
noc00360 Phenylalanine metabolism SBML MML
noc00361 gamma-Hexachlorocyclohexane degradation SBML MML
noc00362 (Undocumented) SBML MML
noc00364 Fluorobenzoate degradation SBML MML
noc00380 Tryptophan metabolism SBML MML
noc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
noc00401 Novobiocin biosynthesis SBML MML
noc00410 beta-Alanine metabolism SBML MML
noc00430 Taurine and hypotaurine metabolism SBML MML
noc00440 Phosphonate and phosphinate metabolism SBML MML
noc00450 Selenoamino acid metabolism SBML MML
noc00460 (Undocumented) SBML MML
noc00471 D-Glutamine and D-glutamate metabolism SBML MML
noc00472 D-Arginine and D-ornithine metabolism SBML MML
noc00473 D-Alanine metabolism SBML MML
noc00480 Glutathione metabolism SBML MML
noc00500 Starch and sucrose metabolism SBML MML
noc00520 Amino sugar and nucleotide sugar metabolism SBML MML
noc00521 Streptomycin biosynthesis SBML MML
noc00523 Polyketide sugar unit biosynthesis SBML MML
noc00530 (Undocumented) SBML MML
noc00540 Lipopolysaccharide biosynthesis SBML MML
noc00550 Peptidoglycan biosynthesis SBML MML
noc00561 Glycerolipid metabolism SBML MML
noc00562 Inositol phosphate metabolism SBML MML
noc00564 Glycerophospholipid metabolism SBML MML
noc00592 alpha-Linolenic acid metabolism SBML MML
noc00620 Pyruvate metabolism SBML MML
noc00622 Toluene and xylene degradation SBML MML
noc00624 1- and 2-Methylnaphthalene degradation SBML MML
noc00630 Glyoxylate and dicarboxylate metabolism SBML MML
noc00632 (Undocumented) SBML MML
noc00640 Propanoate metabolism SBML MML
noc00641 3-Chloroacrylic acid degradation SBML MML
noc00643 Styrene degradation SBML MML
noc00650 Butanoate metabolism SBML MML
noc00660 C5-Branched dibasic acid metabolism SBML MML
noc00670 One carbon pool by folate SBML MML
noc00680 Methane metabolism SBML MML
noc00710 (Undocumented) SBML MML
noc00720 (Undocumented) SBML MML
noc00730 Thiamine metabolism SBML MML
noc00740 Riboflavin metabolism SBML MML
noc00750 Vitamin B6 metabolism SBML MML
noc00760 Nicotinate and nicotinamide metabolism SBML MML
noc00770 Pantothenate and CoA biosynthesis SBML MML
noc00780 Biotin metabolism SBML MML
noc00785 Lipoic acid metabolism SBML MML
noc00790 Folate biosynthesis SBML MML
noc00860 Porphyrin and chlorophyll metabolism SBML MML
noc00900 Terpenoid backbone biosynthesis SBML MML
noc00903 (Undocumented) SBML MML
noc00910 Nitrogen metabolism SBML MML
noc00920 Sulfur metabolism SBML MML
noc00930 Caprolactam degradation SBML MML
noc00940 (Undocumented) SBML MML
noc00941 (Undocumented) SBML MML
noc00950 (Undocumented) SBML MML
noc00970 Aminoacyl-tRNA biosynthesis SBML MML
noc00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
noc00982 (Undocumented) SBML MML
noc00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.