This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pho: Pyrococcus horikoshii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pho00010 Glycolysis / Gluconeogenesis SBML MML
pho00020 Citrate cycle (TCA cycle) SBML MML
pho00030 Pentose phosphate pathway SBML MML
pho00051 Fructose and mannose metabolism SBML MML
pho00052 Galactose metabolism SBML MML
pho00061 Fatty acid biosynthesis SBML MML
pho00071 Fatty acid metabolism SBML MML
pho00100 (Undocumented) SBML MML
pho00120 (Undocumented) SBML MML
pho00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pho00220 (Undocumented) SBML MML
pho00230 Purine metabolism SBML MML
pho00240 Pyrimidine metabolism SBML MML
pho00251 (Undocumented) SBML MML
pho00252 (Undocumented) SBML MML
pho00260 Glycine, serine and threonine metabolism SBML MML
pho00271 (Undocumented) SBML MML
pho00272 (Undocumented) SBML MML
pho00280 Valine, leucine and isoleucine degradation SBML MML
pho00290 Valine, leucine and isoleucine biosynthesis SBML MML
pho00300 Lysine biosynthesis SBML MML
pho00330 Arginine and proline metabolism SBML MML
pho00340 Histidine metabolism SBML MML
pho00350 Tyrosine metabolism SBML MML
pho00360 Phenylalanine metabolism SBML MML
pho00361 gamma-Hexachlorocyclohexane degradation SBML MML
pho00380 Tryptophan metabolism SBML MML
pho00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pho00401 Novobiocin biosynthesis SBML MML
pho00410 beta-Alanine metabolism SBML MML
pho00450 Selenoamino acid metabolism SBML MML
pho00460 (Undocumented) SBML MML
pho00500 Starch and sucrose metabolism SBML MML
pho00510 (Undocumented) SBML MML
pho00520 Amino sugar and nucleotide sugar metabolism SBML MML
pho00521 Streptomycin biosynthesis SBML MML
pho00523 Polyketide sugar unit biosynthesis SBML MML
pho00530 (Undocumented) SBML MML
pho00550 Peptidoglycan biosynthesis SBML MML
pho00562 Inositol phosphate metabolism SBML MML
pho00564 Glycerophospholipid metabolism SBML MML
pho00620 Pyruvate metabolism SBML MML
pho00624 1- and 2-Methylnaphthalene degradation SBML MML
pho00630 Glyoxylate and dicarboxylate metabolism SBML MML
pho00632 (Undocumented) SBML MML
pho00640 Propanoate metabolism SBML MML
pho00641 3-Chloroacrylic acid degradation SBML MML
pho00650 Butanoate metabolism SBML MML
pho00670 One carbon pool by folate SBML MML
pho00680 Methane metabolism SBML MML
pho00710 (Undocumented) SBML MML
pho00720 (Undocumented) SBML MML
pho00730 Thiamine metabolism SBML MML
pho00750 Vitamin B6 metabolism SBML MML
pho00760 Nicotinate and nicotinamide metabolism SBML MML
pho00770 Pantothenate and CoA biosynthesis SBML MML
pho00780 Biotin metabolism SBML MML
pho00785 Lipoic acid metabolism SBML MML
pho00860 Porphyrin and chlorophyll metabolism SBML MML
pho00900 Terpenoid backbone biosynthesis SBML MML
pho00910 Nitrogen metabolism SBML MML
pho00920 Sulfur metabolism SBML MML
pho00950 (Undocumented) SBML MML
pho00970 Aminoacyl-tRNA biosynthesis SBML MML
pho00982 (Undocumented) SBML MML
pho00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.