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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism plu: Photorhabdus luminescens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
plu00010 Glycolysis / Gluconeogenesis SBML MML
plu00020 Citrate cycle (TCA cycle) SBML MML
plu00030 Pentose phosphate pathway SBML MML
plu00031 (Undocumented) SBML MML
plu00040 Pentose and glucuronate interconversions SBML MML
plu00051 Fructose and mannose metabolism SBML MML
plu00052 Galactose metabolism SBML MML
plu00053 Ascorbate and aldarate metabolism SBML MML
plu00061 Fatty acid biosynthesis SBML MML
plu00062 Fatty acid elongation in mitochondria SBML MML
plu00071 Fatty acid metabolism SBML MML
plu00100 (Undocumented) SBML MML
plu00120 (Undocumented) SBML MML
plu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
plu00220 (Undocumented) SBML MML
plu00230 Purine metabolism SBML MML
plu00240 Pyrimidine metabolism SBML MML
plu00251 (Undocumented) SBML MML
plu00252 (Undocumented) SBML MML
plu00260 Glycine, serine and threonine metabolism SBML MML
plu00271 (Undocumented) SBML MML
plu00272 (Undocumented) SBML MML
plu00280 Valine, leucine and isoleucine degradation SBML MML
plu00281 Geraniol degradation SBML MML
plu00290 Valine, leucine and isoleucine biosynthesis SBML MML
plu00300 Lysine biosynthesis SBML MML
plu00310 Lysine degradation SBML MML
plu00330 Arginine and proline metabolism SBML MML
plu00340 Histidine metabolism SBML MML
plu00350 Tyrosine metabolism SBML MML
plu00360 Phenylalanine metabolism SBML MML
plu00361 gamma-Hexachlorocyclohexane degradation SBML MML
plu00362 (Undocumented) SBML MML
plu00380 Tryptophan metabolism SBML MML
plu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
plu00401 Novobiocin biosynthesis SBML MML
plu00410 beta-Alanine metabolism SBML MML
plu00430 Taurine and hypotaurine metabolism SBML MML
plu00450 Selenoamino acid metabolism SBML MML
plu00460 (Undocumented) SBML MML
plu00471 D-Glutamine and D-glutamate metabolism SBML MML
plu00473 D-Alanine metabolism SBML MML
plu00480 Glutathione metabolism SBML MML
plu00500 Starch and sucrose metabolism SBML MML
plu00520 Amino sugar and nucleotide sugar metabolism SBML MML
plu00521 Streptomycin biosynthesis SBML MML
plu00523 Polyketide sugar unit biosynthesis SBML MML
plu00530 (Undocumented) SBML MML
plu00540 Lipopolysaccharide biosynthesis SBML MML
plu00550 Peptidoglycan biosynthesis SBML MML
plu00561 Glycerolipid metabolism SBML MML
plu00562 Inositol phosphate metabolism SBML MML
plu00564 Glycerophospholipid metabolism SBML MML
plu00592 alpha-Linolenic acid metabolism SBML MML
plu00620 Pyruvate metabolism SBML MML
plu00621 (Undocumented) SBML MML
plu00622 Toluene and xylene degradation SBML MML
plu00624 1- and 2-Methylnaphthalene degradation SBML MML
plu00626 Naphthalene and anthracene degradation SBML MML
plu00627 1,4-Dichlorobenzene degradation SBML MML
plu00628 Fluorene degradation SBML MML
plu00629 Carbazole degradation SBML MML
plu00630 Glyoxylate and dicarboxylate metabolism SBML MML
plu00632 (Undocumented) SBML MML
plu00633 Trinitrotoluene degradation SBML MML
plu00640 Propanoate metabolism SBML MML
plu00641 3-Chloroacrylic acid degradation SBML MML
plu00642 Ethylbenzene degradation SBML MML
plu00643 Styrene degradation SBML MML
plu00650 Butanoate metabolism SBML MML
plu00660 C5-Branched dibasic acid metabolism SBML MML
plu00670 One carbon pool by folate SBML MML
plu00680 Methane metabolism SBML MML
plu00710 (Undocumented) SBML MML
plu00720 (Undocumented) SBML MML
plu00730 Thiamine metabolism SBML MML
plu00740 Riboflavin metabolism SBML MML
plu00750 Vitamin B6 metabolism SBML MML
plu00760 Nicotinate and nicotinamide metabolism SBML MML
plu00770 Pantothenate and CoA biosynthesis SBML MML
plu00780 Biotin metabolism SBML MML
plu00785 Lipoic acid metabolism SBML MML
plu00790 Folate biosynthesis SBML MML
plu00860 Porphyrin and chlorophyll metabolism SBML MML
plu00900 Terpenoid backbone biosynthesis SBML MML
plu00903 (Undocumented) SBML MML
plu00906 Carotenoid biosynthesis SBML MML
plu00910 Nitrogen metabolism SBML MML
plu00920 Sulfur metabolism SBML MML
plu00930 Caprolactam degradation SBML MML
plu00940 (Undocumented) SBML MML
plu00950 (Undocumented) SBML MML
plu00960 (Undocumented) SBML MML
plu00970 Aminoacyl-tRNA biosynthesis SBML MML
plu00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
plu00982 (Undocumented) SBML MML
plu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.