This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pmn: Prochlorococcus marinus NATL2A

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pmn00010 Glycolysis / Gluconeogenesis SBML MML
pmn00020 Citrate cycle (TCA cycle) SBML MML
pmn00030 Pentose phosphate pathway SBML MML
pmn00040 Pentose and glucuronate interconversions SBML MML
pmn00051 Fructose and mannose metabolism SBML MML
pmn00052 Galactose metabolism SBML MML
pmn00053 Ascorbate and aldarate metabolism SBML MML
pmn00061 Fatty acid biosynthesis SBML MML
pmn00071 Fatty acid metabolism SBML MML
pmn00100 (Undocumented) SBML MML
pmn00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pmn00220 (Undocumented) SBML MML
pmn00230 Purine metabolism SBML MML
pmn00240 Pyrimidine metabolism SBML MML
pmn00251 (Undocumented) SBML MML
pmn00252 (Undocumented) SBML MML
pmn00260 Glycine, serine and threonine metabolism SBML MML
pmn00271 (Undocumented) SBML MML
pmn00272 (Undocumented) SBML MML
pmn00280 Valine, leucine and isoleucine degradation SBML MML
pmn00290 Valine, leucine and isoleucine biosynthesis SBML MML
pmn00300 Lysine biosynthesis SBML MML
pmn00310 Lysine degradation SBML MML
pmn00330 Arginine and proline metabolism SBML MML
pmn00340 Histidine metabolism SBML MML
pmn00350 Tyrosine metabolism SBML MML
pmn00360 Phenylalanine metabolism SBML MML
pmn00380 Tryptophan metabolism SBML MML
pmn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pmn00401 Novobiocin biosynthesis SBML MML
pmn00410 beta-Alanine metabolism SBML MML
pmn00450 Selenoamino acid metabolism SBML MML
pmn00471 D-Glutamine and D-glutamate metabolism SBML MML
pmn00473 D-Alanine metabolism SBML MML
pmn00480 Glutathione metabolism SBML MML
pmn00500 Starch and sucrose metabolism SBML MML
pmn00520 Amino sugar and nucleotide sugar metabolism SBML MML
pmn00521 Streptomycin biosynthesis SBML MML
pmn00523 Polyketide sugar unit biosynthesis SBML MML
pmn00530 (Undocumented) SBML MML
pmn00540 Lipopolysaccharide biosynthesis SBML MML
pmn00550 Peptidoglycan biosynthesis SBML MML
pmn00561 Glycerolipid metabolism SBML MML
pmn00562 Inositol phosphate metabolism SBML MML
pmn00564 Glycerophospholipid metabolism SBML MML
pmn00590 Arachidonic acid metabolism SBML MML
pmn00620 Pyruvate metabolism SBML MML
pmn00630 Glyoxylate and dicarboxylate metabolism SBML MML
pmn00640 Propanoate metabolism SBML MML
pmn00641 3-Chloroacrylic acid degradation SBML MML
pmn00650 Butanoate metabolism SBML MML
pmn00670 One carbon pool by folate SBML MML
pmn00680 Methane metabolism SBML MML
pmn00710 (Undocumented) SBML MML
pmn00720 (Undocumented) SBML MML
pmn00730 Thiamine metabolism SBML MML
pmn00740 Riboflavin metabolism SBML MML
pmn00750 Vitamin B6 metabolism SBML MML
pmn00760 Nicotinate and nicotinamide metabolism SBML MML
pmn00770 Pantothenate and CoA biosynthesis SBML MML
pmn00780 Biotin metabolism SBML MML
pmn00785 Lipoic acid metabolism SBML MML
pmn00790 Folate biosynthesis SBML MML
pmn00860 Porphyrin and chlorophyll metabolism SBML MML
pmn00900 Terpenoid backbone biosynthesis SBML MML
pmn00906 Carotenoid biosynthesis SBML MML
pmn00910 Nitrogen metabolism SBML MML
pmn00920 Sulfur metabolism SBML MML
pmn00940 (Undocumented) SBML MML
pmn00950 (Undocumented) SBML MML
pmn00970 Aminoacyl-tRNA biosynthesis SBML MML
pmn00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pmn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.