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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ppd: Pelobacter propionicus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ppd00010 Glycolysis / Gluconeogenesis SBML MML
ppd00020 Citrate cycle (TCA cycle) SBML MML
ppd00030 Pentose phosphate pathway SBML MML
ppd00040 Pentose and glucuronate interconversions SBML MML
ppd00051 Fructose and mannose metabolism SBML MML
ppd00052 Galactose metabolism SBML MML
ppd00061 Fatty acid biosynthesis SBML MML
ppd00071 Fatty acid metabolism SBML MML
ppd00100 (Undocumented) SBML MML
ppd00120 (Undocumented) SBML MML
ppd00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ppd00220 (Undocumented) SBML MML
ppd00230 Purine metabolism SBML MML
ppd00240 Pyrimidine metabolism SBML MML
ppd00251 (Undocumented) SBML MML
ppd00252 (Undocumented) SBML MML
ppd00260 Glycine, serine and threonine metabolism SBML MML
ppd00271 (Undocumented) SBML MML
ppd00272 (Undocumented) SBML MML
ppd00280 Valine, leucine and isoleucine degradation SBML MML
ppd00290 Valine, leucine and isoleucine biosynthesis SBML MML
ppd00300 Lysine biosynthesis SBML MML
ppd00330 Arginine and proline metabolism SBML MML
ppd00340 Histidine metabolism SBML MML
ppd00350 Tyrosine metabolism SBML MML
ppd00360 Phenylalanine metabolism SBML MML
ppd00380 Tryptophan metabolism SBML MML
ppd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ppd00401 Novobiocin biosynthesis SBML MML
ppd00410 beta-Alanine metabolism SBML MML
ppd00430 Taurine and hypotaurine metabolism SBML MML
ppd00440 Phosphonate and phosphinate metabolism SBML MML
ppd00450 Selenoamino acid metabolism SBML MML
ppd00471 D-Glutamine and D-glutamate metabolism SBML MML
ppd00473 D-Alanine metabolism SBML MML
ppd00480 Glutathione metabolism SBML MML
ppd00500 Starch and sucrose metabolism SBML MML
ppd00520 Amino sugar and nucleotide sugar metabolism SBML MML
ppd00521 Streptomycin biosynthesis SBML MML
ppd00523 Polyketide sugar unit biosynthesis SBML MML
ppd00530 (Undocumented) SBML MML
ppd00540 Lipopolysaccharide biosynthesis SBML MML
ppd00550 Peptidoglycan biosynthesis SBML MML
ppd00561 Glycerolipid metabolism SBML MML
ppd00562 Inositol phosphate metabolism SBML MML
ppd00564 Glycerophospholipid metabolism SBML MML
ppd00590 Arachidonic acid metabolism SBML MML
ppd00620 Pyruvate metabolism SBML MML
ppd00624 1- and 2-Methylnaphthalene degradation SBML MML
ppd00625 (Undocumented) SBML MML
ppd00630 Glyoxylate and dicarboxylate metabolism SBML MML
ppd00633 Trinitrotoluene degradation SBML MML
ppd00640 Propanoate metabolism SBML MML
ppd00641 3-Chloroacrylic acid degradation SBML MML
ppd00650 Butanoate metabolism SBML MML
ppd00660 C5-Branched dibasic acid metabolism SBML MML
ppd00670 One carbon pool by folate SBML MML
ppd00680 Methane metabolism SBML MML
ppd00710 (Undocumented) SBML MML
ppd00720 (Undocumented) SBML MML
ppd00730 Thiamine metabolism SBML MML
ppd00740 Riboflavin metabolism SBML MML
ppd00750 Vitamin B6 metabolism SBML MML
ppd00760 Nicotinate and nicotinamide metabolism SBML MML
ppd00770 Pantothenate and CoA biosynthesis SBML MML
ppd00780 Biotin metabolism SBML MML
ppd00785 Lipoic acid metabolism SBML MML
ppd00790 Folate biosynthesis SBML MML
ppd00860 Porphyrin and chlorophyll metabolism SBML MML
ppd00900 Terpenoid backbone biosynthesis SBML MML
ppd00910 Nitrogen metabolism SBML MML
ppd00920 Sulfur metabolism SBML MML
ppd00940 (Undocumented) SBML MML
ppd00941 (Undocumented) SBML MML
ppd00950 (Undocumented) SBML MML
ppd00970 Aminoacyl-tRNA biosynthesis SBML MML
ppd00982 (Undocumented) SBML MML
ppd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.