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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rak: Rickettsia akari

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rak00010 Glycolysis / Gluconeogenesis SBML MML
rak00020 Citrate cycle (TCA cycle) SBML MML
rak00061 Fatty acid biosynthesis SBML MML
rak00062 Fatty acid elongation in mitochondria SBML MML
rak00071 Fatty acid metabolism SBML MML
rak00072 Synthesis and degradation of ketone bodies SBML MML
rak00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rak00230 Purine metabolism SBML MML
rak00240 Pyrimidine metabolism SBML MML
rak00251 (Undocumented) SBML MML
rak00252 (Undocumented) SBML MML
rak00260 Glycine, serine and threonine metabolism SBML MML
rak00271 (Undocumented) SBML MML
rak00272 (Undocumented) SBML MML
rak00280 Valine, leucine and isoleucine degradation SBML MML
rak00290 Valine, leucine and isoleucine biosynthesis SBML MML
rak00300 Lysine biosynthesis SBML MML
rak00310 Lysine degradation SBML MML
rak00330 Arginine and proline metabolism SBML MML
rak00350 Tyrosine metabolism SBML MML
rak00380 Tryptophan metabolism SBML MML
rak00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rak00430 Taurine and hypotaurine metabolism SBML MML
rak00450 Selenoamino acid metabolism SBML MML
rak00471 D-Glutamine and D-glutamate metabolism SBML MML
rak00473 D-Alanine metabolism SBML MML
rak00480 Glutathione metabolism SBML MML
rak00520 Amino sugar and nucleotide sugar metabolism SBML MML
rak00521 Streptomycin biosynthesis SBML MML
rak00530 (Undocumented) SBML MML
rak00540 Lipopolysaccharide biosynthesis SBML MML
rak00550 Peptidoglycan biosynthesis SBML MML
rak00562 Inositol phosphate metabolism SBML MML
rak00564 Glycerophospholipid metabolism SBML MML
rak00620 Pyruvate metabolism SBML MML
rak00630 Glyoxylate and dicarboxylate metabolism SBML MML
rak00632 (Undocumented) SBML MML
rak00640 Propanoate metabolism SBML MML
rak00650 Butanoate metabolism SBML MML
rak00670 One carbon pool by folate SBML MML
rak00710 (Undocumented) SBML MML
rak00720 (Undocumented) SBML MML
rak00760 Nicotinate and nicotinamide metabolism SBML MML
rak00770 Pantothenate and CoA biosynthesis SBML MML
rak00780 Biotin metabolism SBML MML
rak00790 Folate biosynthesis SBML MML
rak00791 Atrazine degradation SBML MML
rak00860 Porphyrin and chlorophyll metabolism SBML MML
rak00900 Terpenoid backbone biosynthesis SBML MML
rak00910 Nitrogen metabolism SBML MML
rak00970 Aminoacyl-tRNA biosynthesis SBML MML
rak00980 Metabolism of xenobiotics by cytochrome P450 SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.