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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rpe: Rhodopseudomonas palustris BisA53

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rpe00010 Glycolysis / Gluconeogenesis SBML MML
rpe00020 Citrate cycle (TCA cycle) SBML MML
rpe00030 Pentose phosphate pathway SBML MML
rpe00031 (Undocumented) SBML MML
rpe00040 Pentose and glucuronate interconversions SBML MML
rpe00051 Fructose and mannose metabolism SBML MML
rpe00052 Galactose metabolism SBML MML
rpe00053 Ascorbate and aldarate metabolism SBML MML
rpe00061 Fatty acid biosynthesis SBML MML
rpe00062 Fatty acid elongation in mitochondria SBML MML
rpe00071 Fatty acid metabolism SBML MML
rpe00072 Synthesis and degradation of ketone bodies SBML MML
rpe00100 (Undocumented) SBML MML
rpe00120 (Undocumented) SBML MML
rpe00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rpe00220 (Undocumented) SBML MML
rpe00230 Purine metabolism SBML MML
rpe00240 Pyrimidine metabolism SBML MML
rpe00251 (Undocumented) SBML MML
rpe00252 (Undocumented) SBML MML
rpe00260 Glycine, serine and threonine metabolism SBML MML
rpe00271 (Undocumented) SBML MML
rpe00272 (Undocumented) SBML MML
rpe00280 Valine, leucine and isoleucine degradation SBML MML
rpe00281 Geraniol degradation SBML MML
rpe00290 Valine, leucine and isoleucine biosynthesis SBML MML
rpe00300 Lysine biosynthesis SBML MML
rpe00310 Lysine degradation SBML MML
rpe00330 Arginine and proline metabolism SBML MML
rpe00340 Histidine metabolism SBML MML
rpe00350 Tyrosine metabolism SBML MML
rpe00360 Phenylalanine metabolism SBML MML
rpe00361 gamma-Hexachlorocyclohexane degradation SBML MML
rpe00362 (Undocumented) SBML MML
rpe00364 Fluorobenzoate degradation SBML MML
rpe00380 Tryptophan metabolism SBML MML
rpe00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rpe00401 Novobiocin biosynthesis SBML MML
rpe00410 beta-Alanine metabolism SBML MML
rpe00430 Taurine and hypotaurine metabolism SBML MML
rpe00440 Phosphonate and phosphinate metabolism SBML MML
rpe00450 Selenoamino acid metabolism SBML MML
rpe00460 (Undocumented) SBML MML
rpe00471 D-Glutamine and D-glutamate metabolism SBML MML
rpe00472 D-Arginine and D-ornithine metabolism SBML MML
rpe00473 D-Alanine metabolism SBML MML
rpe00480 Glutathione metabolism SBML MML
rpe00500 Starch and sucrose metabolism SBML MML
rpe00520 Amino sugar and nucleotide sugar metabolism SBML MML
rpe00521 Streptomycin biosynthesis SBML MML
rpe00523 Polyketide sugar unit biosynthesis SBML MML
rpe00530 (Undocumented) SBML MML
rpe00540 Lipopolysaccharide biosynthesis SBML MML
rpe00550 Peptidoglycan biosynthesis SBML MML
rpe00561 Glycerolipid metabolism SBML MML
rpe00562 Inositol phosphate metabolism SBML MML
rpe00564 Glycerophospholipid metabolism SBML MML
rpe00590 Arachidonic acid metabolism SBML MML
rpe00592 alpha-Linolenic acid metabolism SBML MML
rpe00620 Pyruvate metabolism SBML MML
rpe00622 Toluene and xylene degradation SBML MML
rpe00623 2,4-Dichlorobenzoate degradation SBML MML
rpe00624 1- and 2-Methylnaphthalene degradation SBML MML
rpe00625 (Undocumented) SBML MML
rpe00626 Naphthalene and anthracene degradation SBML MML
rpe00627 1,4-Dichlorobenzene degradation SBML MML
rpe00628 Fluorene degradation SBML MML
rpe00630 Glyoxylate and dicarboxylate metabolism SBML MML
rpe00631 1,2-Dichloroethane degradation SBML MML
rpe00632 (Undocumented) SBML MML
rpe00633 Trinitrotoluene degradation SBML MML
rpe00640 Propanoate metabolism SBML MML
rpe00641 3-Chloroacrylic acid degradation SBML MML
rpe00642 Ethylbenzene degradation SBML MML
rpe00643 Styrene degradation SBML MML
rpe00650 Butanoate metabolism SBML MML
rpe00660 C5-Branched dibasic acid metabolism SBML MML
rpe00670 One carbon pool by folate SBML MML
rpe00680 Methane metabolism SBML MML
rpe00710 (Undocumented) SBML MML
rpe00720 (Undocumented) SBML MML
rpe00730 Thiamine metabolism SBML MML
rpe00740 Riboflavin metabolism SBML MML
rpe00750 Vitamin B6 metabolism SBML MML
rpe00760 Nicotinate and nicotinamide metabolism SBML MML
rpe00770 Pantothenate and CoA biosynthesis SBML MML
rpe00780 Biotin metabolism SBML MML
rpe00785 Lipoic acid metabolism SBML MML
rpe00790 Folate biosynthesis SBML MML
rpe00791 Atrazine degradation SBML MML
rpe00860 Porphyrin and chlorophyll metabolism SBML MML
rpe00900 Terpenoid backbone biosynthesis SBML MML
rpe00903 (Undocumented) SBML MML
rpe00906 Carotenoid biosynthesis SBML MML
rpe00910 Nitrogen metabolism SBML MML
rpe00920 Sulfur metabolism SBML MML
rpe00930 Caprolactam degradation SBML MML
rpe00940 (Undocumented) SBML MML
rpe00960 (Undocumented) SBML MML
rpe00970 Aminoacyl-tRNA biosynthesis SBML MML
rpe00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rpe00982 (Undocumented) SBML MML
rpe00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.